RetrogeneDB ID: | retro_mmul_2547 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:151772499..151773011(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000012826 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000028844 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:F6Z534] |
Percent Identity: | 88.37 % |
Parental protein coverage: | 97.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LREYKVVGRCLPTPKCH-PPLYRMRIFAPNHVVAKSRFWYFVSQLK-KMKKSSGEIVYCGQVFEKSPLRV |
L.EYKVVGRCLPTPKCH.PPLYRMRIFAPNHVVA.S.F..FVSQLK.K.KKSSGEIVYCGQVFEK.PLRV | |
Retrocopy | LQEYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAESPFRHFVSQLKIKIKKSSGEIVYCGQVFEKRPLRV |
Parental | KNFGIWLRYDSRSGTHNMYREYRDLTTAG-AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQ |
KNFGIWLRYDSRSGTHNMYREYRDLTTAG.AVTQCY.DMGARH.AR.HSIQIMKV.EIAASKCR..A.KQ | |
Retrocopy | KNFGIWLRYDSRSGTHNMYREYRDLTTAG<AVTQCY*DMGARHGARVHSIQIMKVREIAASKCRWSAIKQ |
Parental | FHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF |
FHDSKIKFPLPHRVLRRQHK.R..TKRPNTFF | |
Retrocopy | FHDSKIKFPLPHRVLRRQHKSRLITKRPNTFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 60 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .17 RPM |
SRP007412_heart | 0 .00 RPM | 33 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .81 RPM |
SRP007412_liver | 0 .00 RPM | 78 .06 RPM |
SRP007412_testis | 0 .00 RPM | 29 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4776 |
Pongo abelii | retro_pabe_3717 |
Callithrix jacchus | retro_cjac_4134 |