Parental gene:

RPL18A, ENSSSCG00000013889

Aliases:None
Description:ribosomal protein L18a [Source:HGNC Symbol;Acc:10311]
Organism:Pig (Sus scrofa)
Coordinates:2:59462182..59466333(-)


>ENSSSCG00000013889
ATGAAAAAGCAGATATGGGGTCGAGGAACCAATGGGCTGCCGGCCTCGAAAGGGAGGGACTTCCGGCAGCGAAATCAAGG
TGAGCGGCTGCGCGAGAGCGGCTACTTCCTTTCCGGAGGTGGCGGCGAACGCGGAGAGAGCGCCATGAAGGCCTCGGGCA
CGCTGCGAGAGTACAAGGTGGTGGGGCGCTGCCTGCCCACCCCGAAATGCCGCACACCACCCCTCTATCGCATGCGAATC
TTTGCTCCTAATCATGTTGTCGCCAAGTCCCGCTTCTGGTACTTTGTGTCTCAGCTGAAGAAGATGAAGAAGTCTTCAGG
GGAAATAGTCTACTGTGGCCAGGTGTTTGAGAAGTCTCCCCTGCGGGTGAAGAACTTTGGCATCTGGTTGCGCTACGACT
CCCGCAGTGGCACCCACAACATGTATCGGGAGTACCGGGACCTGACCACAGCCGGCGCTGTCACCCAGTGCTACCGAGAC
ATGGGTGCCCGGCACCGGGCCCGGGCCCACTCCATCCAGATCATGAAGGTGGAGGAGATTGCAGCCAGCAAGTGCCGCCG
ACCAGCAGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTACCCCACCGGGTCCTCCGTCGCCAGCACAAGCCAC
GCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG

Library Parental gene expression (RPM)
SRP014902_placenta 823 .73 RPM
SRP014902_testis 606 .52 RPM
SRP018288_heart 208 .61 RPM
SRP018288_kidney 229 .42 RPM
SRP018288_liver 271 .05 RPM
SRP018288_lung 509 .54 RPM
SRP018856_adipose 461 .17 RPM
SRP035408_brain 199 .65 RPM
SRP035408_liver 149 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003125 ortholog_one2one 1 retrogene
retro_acar_86,
Bos taurus ENSBTAG00000015831 possible_ortholog 5 retrogenes
retro_btau_145, retro_btau_1586, retro_btau_842, retro_btau_917, retro_btau_922,
Canis familiaris ENSCAFG00000015122 ortholog_one2one 1 retrogene
retro_cfam_231,
Callithrix jacchus ENSCJAG00000014006 possible_ortholog 7 retrogenes
retro_cjac_1628, retro_cjac_2814, retro_cjac_3192, retro_cjac_3906, retro_cjac_4134, retro_cjac_441, retro_cjac_642,
Cavia porcellus ENSCPOG00000015205 ortholog_one2one 1 retrogene
retro_cpor_1478,
Equus caballus ENSECAG00000015258 possible_ortholog 1 retrogene
retro_ecab_745,
Felis catus ENSFCAG00000007518 ortholog_one2one 6 retrogenes
retro_fcat_1190, retro_fcat_1213, retro_fcat_1716, retro_fcat_1848, retro_fcat_267, retro_fcat_831,
Gorilla gorilla ENSGGOG00000002870 possible_ortholog 8 retrogenes
retro_ggor_1215, retro_ggor_1680, retro_ggor_1868, retro_ggor_1933, retro_ggor_195, retro_ggor_227, retro_ggor_2775, retro_ggor_2940,
Macropus eugenii ENSMEUG00000003228 ortholog_one2many 2 retrogenes
retro_meug_36, retro_meug_49,
Macaca mulatta ENSMMUG00000028844 possible_ortholog 6 retrogenes
retro_mmul_1416, retro_mmul_1591, retro_mmul_2233, retro_mmul_2547, retro_mmul_292, retro_mmul_364,
Monodelphis domestica ENSMODG00000019167 ortholog_one2one 2 retrogenes
retro_mdom_349, retro_mdom_680,
Mustela putorius furo ENSMPUG00000015786 ortholog_one2one 4 retrogenes
retro_mputfur_1007, retro_mputfur_1189, retro_mputfur_1574, retro_mputfur_457,
Pongo abelii ENSPPYG00000009725 possible_ortholog 10 retrogenes
retro_pabe_1200, retro_pabe_1319, retro_pabe_1620, retro_pabe_2239, retro_pabe_2302, retro_pabe_3680, retro_pabe_3717, retro_pabe_3802, retro_pabe_482, retro_pabe_487,
Pan troglodytes ENSPTRG00000010686 possible_ortholog 3 retrogenes
retro_ptro_1078, retro_ptro_1803, retro_ptro_27,
Pteropus vampyrus ENSPVAG00000017378 ortholog_one2one 6 retrogenes
retro_pvam_1314, retro_pvam_133, retro_pvam_155, retro_pvam_200, retro_pvam_607, retro_pvam_828,
Sarcophilus harrisii ENSSHAG00000000406 ortholog_one2one 3 retrogenes
retro_shar_435, retro_shar_474, retro_shar_706,
Tursiops truncatus ENSTTRG00000008977 ortholog_one2one 2 retrogenes
retro_ttru_151, retro_ttru_508,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_184 68.42 58.48
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2. retro_sscr_1103 69.87 68.30
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Download FASTA sequences of all ENSSSCG00000013889 retrocopies