Parental gene: | RPL18A, ENSGGOG00000002870 |
| Aliases: | None |
| Description: | 60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:G3QK54] |
| Organism: | Gorilla (Gorilla gorilla) |
| Coordinates: | 19:18215536..18218924(+) |
>ENSGGOG00000002870
GCCATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCC
CCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGA
AGATGAAGAAGTCTTCGGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCGCTGCGGGTGAAGAACTTCGGG
ATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGT
CACGCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCG
CGGCCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCACTGCCCCACCGGGTCCTG
CGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG
GCCATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCC
CCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGA
AGATGAAGAAGTCTTCGGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCGCTGCGGGTGAAGAACTTCGGG
ATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGT
CACGCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCG
CGGCCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCACTGCCCCACCGGGTCCTG
CGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 81 .71 RPM |
| SRP007412_cerebellum | 111 .54 RPM |
| SRP007412_heart | 98 .47 RPM |
| SRP007412_kidney | 133 .54 RPM |
| SRP007412_liver | 154 .63 RPM |
| SRP007412_testis | 101 .53 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000003125 | ortholog_one2many | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000010878 | possible_ortholog | 5 retrogenes | |
| Bos taurus | ENSBTAG00000015831 | ortholog_one2one | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000015122 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014006 | ortholog_one2one | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015205 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000015258 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000007518 | possible_ortholog | 6 retrogenes | |
| Homo sapiens | ENSG00000105640 | ortholog_one2one | 11 retrogenes | |
| Macropus eugenii | ENSMEUG00000003228 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000006701 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000028844 | possible_ortholog | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000019167 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015786 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000045128 | ortholog_one2one | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005889 | ortholog_one2one | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031828 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000009725 | ortholog_one2one | 10 retrogenes | |
| Pan troglodytes | ENSPTRG00000010686 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000017378 | possible_ortholog | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018795 | ortholog_one2one | 6 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000000406 | ortholog_one2many | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000013889 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007788 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010488 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008977 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ggor_195 | 80.11 | 99.44 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ggor_227 | 87.01 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ggor_1215 | 71.82 | 61.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ggor_1680 | 98.31 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ggor_1868 | 78.70 | 94.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ggor_1933 | 83.05 | 99.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ggor_2775 | 96.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ggor_2940 | 59.55 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSGGOG00000002870 retrocopies