Parental gene:

IFT20, ENSG00000109083

Aliases:None
Description:intraflagellar transport 20 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:30989]
Organism:Human (Homo sapiens)
Coordinates:17:26655351..26662515(-)


>ENSG00000109083
ATGACACACCTCCTCCTGACTGCCACTGTCACTCCTTCAGAGCAGAACTCCTCTAGGGAACCTGGATGGGAAACAGCCAT
GGCCAAGGACATCCTGGGTGAAGCAGGGCTACACTTTGATGAACTGAACAAGCTGAGGGTGTTGGACCCAGAGGTTACCC
AGCAGACCATAGAGCTGAAGGAAGAGTGCAAAGACTTTGTGGACAAAATTGGCCAGTTTCAGAAAATAGTTGGTGGTTTA
ATTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAAAAGATGAAGGCCATCGGTGCTCGGAACTTGCTCAAATC
TATAGCAAAGCAGAGAGAAGCTCAACAGCAGCAACTTCAAGCCCTAATAGCAGAAAAGAAAATGCAGCTAGAAAGGTATC
GGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGAACAAAATGAATTTATTGACCAATTTATTTTTCAGAAATGA

Library Parental gene expression (RPM)
bodymap2_liver 9 .61 RPM
bodymap2_lung 12 .99 RPM
bodymap2_breast 11 .36 RPM
bodymap2_adipose 8 .29 RPM
bodymap2_adrenal 8 .39 RPM
bodymap2_skeletal_muscle 1 .66 RPM
bodymap2_thyroid 15 .44 RPM
bodymap2_prostate 15 .45 RPM
bodymap2_colon 13 .55 RPM
bodymap2_testis 15 .63 RPM
bodymap2_brain 7 .03 RPM
bodymap2_heart 3 .45 RPM
bodymap2_white_blood_cells 9 .37 RPM
bodymap2_lymph_node 15 .08 RPM
bodymap2_ovary 9 .08 RPM
bodymap2_kidney 11 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005111 ortholog_one2one 2 retrogenes
retro_amel_1011, retro_amel_1337,
Bos taurus ENSBTAG00000008110 ortholog_one2one 1 retrogene
retro_btau_257,
Callithrix jacchus ENSCJAG00000012534 ortholog_one2one 2 retrogenes
retro_cjac_2404, retro_cjac_687,
Cavia porcellus ENSCPOG00000003153 ortholog_one2one 1 retrogene
retro_cpor_152,
Echinops telfairi ENSETEG00000018843 ortholog_one2one 2 retrogenes
retro_etel_1045, retro_etel_1181,
Gorilla gorilla ENSGGOG00000004568 ortholog_one2one 2 retrogenes
retro_ggor_1026, retro_ggor_1217,
Microcebus murinus ENSMICG00000005074 ortholog_one2one 1 retrogene
retro_mmur_987,
Myotis lucifugus ENSMLUG00000008709 ortholog_one2many 2 retrogenes
retro_mluc_180, retro_mluc_1924,
Macaca mulatta ENSMMUG00000019143 ortholog_one2one 2 retrogenes
retro_mmul_2165, retro_mmul_2234,
Monodelphis domestica ENSMODG00000019233 ortholog_one2one 1 retrogene
retro_mdom_681,
Mustela putorius furo ENSMPUG00000014353 ortholog_one2one 1 retrogene
retro_mputfur_247,
Mus musculus ENSMUSG00000001105 ortholog_one2one 1 retrogene
retro_mmus_3245,
Nomascus leucogenys ENSNLEG00000001883 ortholog_one2one 2 retrogenes
retro_nleu_1067, retro_nleu_1941,
Oryctolagus cuniculus ENSOCUG00000007773 ortholog_one2one 1 retrogene
retro_ocun_438,
Otolemur garnettii ENSOGAG00000003333 ortholog_one2one 2 retrogenes
retro_ogar_1169, retro_ogar_72,
Ochotona princeps ENSOPRG00000005826 ortholog_one2one 6 retrogenes
retro_opri_110, retro_opri_1185, retro_opri_205, retro_opri_293, retro_opri_375, retro_opri_872,
Pongo abelii ENSPPYG00000008087 ortholog_one2one 2 retrogenes
retro_pabe_1097, retro_pabe_1322,
Sus scrofa ENSSSCG00000023719 ortholog_one2one 1 retrogene
retro_sscr_315,
Ictidomys tridecemlineatus ENSSTOG00000007554 ortholog_one2one 1 retrogene
retro_itri_713,
Tupaia belangeri ENSTBEG00000005557 ortholog_one2one 2 retrogenes
retro_tbel_180, retro_tbel_1954,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1314 78.99 74.68
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Download FASTA sequences of all ENSG00000109083 retrocopies