RetrogeneDB ID: | retro_pabe_1322 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:85696335..85696724(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IFT20 | ||
Ensembl ID: | ENSPPYG00000008087 | ||
Aliases: | None | ||
Description: | intraflagellar transport 20 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:30989] |
Percent Identity: | 65.93 % |
Parental protein coverage: | 82.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MTHLL-LTATVTPSEQNSSREPGWETAMAK-DILGEAGLHFDELNK-LRVLDPEVTQQTIELKEECKDFV |
MTHLL.L..TVTP.EQN.S.....E...AK.D.LGEAGL.FDEL.K...V.DPEVT.QT.E.KEEC..FV | |
Retrocopy | MTHLL<LATTVTPTEQNHSSAGKLEGKQAK<DSLGEAGLCFDELSK<AWVRDPEVT*QTREPKEECMGFV |
Parental | DKIGQFQK-IVGGLIELVDQLAKEAENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLE |
.KI..FQK.IVGGLIE.VDQLAK.AENEK.K...A.NLL...AKQREAQQQQL.A..AE.KM.L. | |
Retrocopy | GKISSFQK<IVGGLIEPVDQLAKAAENEKRKVVSAWNLLQFMAKQREAQQQQLPARTAEEKMWLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .98 RPM |
SRP007412_heart | 0 .00 RPM | 3 .46 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .31 RPM |
SRP007412_liver | 0 .00 RPM | 13 .19 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1079 |
Gorilla gorilla | retro_ggor_1217 |
Macaca mulatta | retro_mmul_2234 |