Parental gene:

CCDC53, ENSG00000120860

Aliases:CCDC53, CGI-116
Description:coiled-coil domain containing 53 [Source:HGNC Symbol;Acc:24256]
Organism:Human (Homo sapiens)
Coordinates:12:102406704..102455927(-)


>ENSG00000120860
ATGGATGAGGACGGGCTTCCTCTCATGGGGTCAGGCATAGACCTGACCAAGGTGCCAGCTATTCAACAGAAAAGAACGGT
GGCTTTTCTAAACCAATTTGTGGTGCACACTGTACAGTTCCTCAACCGCTTTTCTACAGTTTGTGAGGAGAAACTGGCAG
ACCTTTCACTTCGTATCCAACAAATTGAAACAACTCTCAATATTTTAGATGCAAAGTTGTCATCTATCCCAGGCCTAGAT
GATGTCACAGTTGAAGTATCTCCTTTAAATGTCACCAGTGTCACAAATGGAGCACATCCTGAAGCCACTTCAGAGCAACC
ACAGCAGAACAGTACACAAGACTCTGGACTACAGGAAAGTGAAGTATCAGCAGAAAATATCTTAACTGTAGCCAAGGATC
CAAGATATGCCAGATATCTCAAAATGGTTCAAGTGGGTGTACCAGTGATGGCAATAAGAAACAAAATGATATCAGAAGGA
CTAGACCCAGATCTTCTTGAGAGGCCAGATGCTCCAGTGCCTGATGGCGAAAGTGAGAAAACTGTAGAAGAAAGTTCAGA
TAGCGAATCTTCTTTTAGTGATTAA

Library Parental gene expression (RPM)
bodymap2_adipose 12 .32 RPM
bodymap2_adrenal 14 .70 RPM
bodymap2_brain 21 .38 RPM
bodymap2_breast 18 .07 RPM
bodymap2_colon 21 .66 RPM
bodymap2_heart 13 .96 RPM
bodymap2_kidney 24 .16 RPM
bodymap2_liver 10 .18 RPM
bodymap2_lung 10 .11 RPM
bodymap2_lymph_node 19 .72 RPM
bodymap2_ovary 19 .86 RPM
bodymap2_prostate 27 .76 RPM
bodymap2_skeletal_muscle 8 .91 RPM
bodymap2_testis 79 .56 RPM
bodymap2_thyroid 17 .25 RPM
bodymap2_white_blood_cells 15 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006329 ortholog_one2one 1 retrogene
retro_amel_791,
Canis familiaris ENSCAFG00000007270 ortholog_one2many 2 retrogenes
retro_cfam_53, retro_cfam_550,
Callithrix jacchus ENSCJAG00000014225 ortholog_one2one 1 retrogene
retro_cjac_4073,
Echinops telfairi ENSETEG00000002254 ortholog_one2one 1 retrogene
retro_etel_1917,
Felis catus ENSFCAG00000019358 ortholog_one2one 1 retrogene
retro_fcat_498,
Gorilla gorilla ENSGGOG00000014975 ortholog_one2one 1 retrogene
retro_ggor_2922,
Loxodonta africana ENSLAFG00000007850 ortholog_one2one 1 retrogene
retro_lafr_761,
Macropus eugenii ENSMEUG00000004888 ortholog_one2one 3 retrogenes
retro_meug_1441, retro_meug_576, retro_meug_629,
Myotis lucifugus ENSMLUG00000000401 ortholog_one2one 4 retrogenes
retro_mluc_2014, retro_mluc_2015, retro_mluc_2633, retro_mluc_502,
Monodelphis domestica ENSMODG00000002579 ortholog_one2many 1 retrogene
retro_mdom_959,
Mus musculus ENSMUSG00000020056 ortholog_one2one 1 retrogene
retro_mmus_1773,
Nomascus leucogenys ENSNLEG00000006365 ortholog_one2one 1 retrogene
retro_nleu_2366,
Otolemur garnettii ENSOGAG00000003322 ortholog_one2one 2 retrogenes
retro_ogar_3267, retro_ogar_738,
Pongo abelii ENSPPYG00000004878 ortholog_one2one 1 retrogene
retro_pabe_3649,
Pan troglodytes ENSPTRG00000005358 ortholog_one2one 1 retrogene
retro_ptro_3121,
Ictidomys tridecemlineatus ENSSTOG00000001870 ortholog_one2one 1 retrogene
retro_itri_970,
Tupaia belangeri ENSTBEG00000008498 ortholog_one2one 3 retrogenes
retro_tbel_1036, retro_tbel_1165, retro_tbel_2967,
Tarsius syrichta ENSTSYG00000000587 ortholog_one2one 4 retrogenes
retro_tsyr_1100, retro_tsyr_265, retro_tsyr_443, retro_tsyr_955,
Tursiops truncatus ENSTTRG00000017221 ortholog_one2one 4 retrogenes
retro_ttru_1569, retro_ttru_1865, retro_ttru_1919, retro_ttru_935,
Vicugna pacos ENSVPAG00000002010 ortholog_one2one 1 retrogene
retro_vpac_446,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4696 77.55 100.00
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Download FASTA sequences of all ENSG00000120860 retrocopies