Parental gene:

CCDC90B, ENSG00000137500

Aliases:CCDC90B, MDS011, MDS025
Description:coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:28108]
Organism:Human (Homo sapiens)
Coordinates:11:82970138..82997450(-)


>ENSG00000137500
ATGAATAGTCGCCAGGCTTGGCGGCTCTTTCTCTCCCAAGGCAGAGGAGATCGTTGGGTTTCAAGGCCCCGCGGGCATTT
CTCGCCGGCCCTGCGGAGAGAGTTCTTCACTACCACAACCAAGGAGGGATATGATAGGCGGCCAGTGGATATAACTCCTT
TAGAACAAAGGAAATTAACTTTTGATACCCATGCATTGGTTCAGGACTTGGAAACTCATGGATTTGACAAAACACAAGCA
GAAACAATTGTATCAGCGTTAACTGCTTTATCAAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCA
ACAGGAAATAACAGTACAACAGCTAATGGCTCATTTGGATGCTATCAGGAAAGACATGGTCATCCTAGAGAAAAGTGAAT
TTGCAAATCTGAGAGCAGAGAATGAGAAAATGAAAATTGAATTAGACCAAGTTAAGCAACAACTAATGCATGAAACCAGT
CGAATCAGAGCAGATAATAAACTGGATATCAACTTAGAAAGGAGCAGAGTAACAGATATGTTTACAGATCAAGAAAAGCA
ACTTATGGAAACAACTACAGAATTTACAAAAAAGGATACTCAAACCAAAAGTATTATTTCAGAGACCAGTAATAAAATTG
ACGCTGAAATTGCTTCCTTAAAAACACTGATGGAATCTAACAAACTTGAGACAATTCGTTATCTTGCAGCTTCGGTGTTT
ACTTGCCTGGCAATAGCATTGGGATTTTATAGATTCTGGAAGTAG

Library Parental gene expression (RPM)
bodymap2_adipose 26 .60 RPM
bodymap2_adrenal 34 .08 RPM
bodymap2_brain 30 .57 RPM
bodymap2_breast 40 .31 RPM
bodymap2_colon 38 .11 RPM
bodymap2_heart 17 .78 RPM
bodymap2_kidney 33 .40 RPM
bodymap2_liver 16 .35 RPM
bodymap2_lung 17 .18 RPM
bodymap2_lymph_node 36 .99 RPM
bodymap2_ovary 52 .03 RPM
bodymap2_prostate 44 .22 RPM
bodymap2_skeletal_muscle 10 .24 RPM
bodymap2_testis 112 .68 RPM
bodymap2_thyroid 39 .56 RPM
bodymap2_white_blood_cells 34 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010541 ortholog_one2one 2 retrogenes
retro_chof_1396, retro_chof_780,
Callithrix jacchus ENSCJAG00000014547 ortholog_one2many 1 retrogene
retro_cjac_219,
Homo sapiens ENSG00000050393 within_species_paralog 1 retrogene
retro_hsap_1795,
Macaca mulatta ENSMMUG00000020154 ortholog_one2one 2 retrogenes
retro_mmul_1880, retro_mmul_773,
Nomascus leucogenys ENSNLEG00000016478 ortholog_one2one 1 retrogene
retro_nleu_1644,
Ochotona princeps ENSOPRG00000004144 ortholog_one2one 2 retrogenes
retro_opri_197, retro_opri_682,
Pongo abelii ENSPPYG00000003736 ortholog_one2one 1 retrogene
retro_pabe_2525,
Pan troglodytes ENSPTRG00000004129 ortholog_one2one 1 retrogene
retro_ptro_1990,
Pteropus vampyrus ENSPVAG00000005459 ortholog_one2one 1 retrogene
retro_pvam_614,
Rattus norvegicus ENSRNOG00000009462 ortholog_one2one 1 retrogene
retro_rnor_868,
Tupaia belangeri ENSTBEG00000014665 ortholog_one2one 2 retrogenes
retro_tbel_3436, retro_tbel_4221,
Tarsius syrichta ENSTSYG00000011196 ortholog_one2one 1 retrogene
retro_tsyr_710,
Tursiops truncatus ENSTTRG00000003998 ortholog_one2one 1 retrogene
retro_ttru_445,
Vicugna pacos ENSVPAG00000007753 ortholog_one2one 1 retrogene
retro_vpac_366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3050 90.18 88.19
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Download FASTA sequences of all ENSG00000137500 retrocopies