Parental gene:

CCDC90B, ENSPTRG00000004129

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:81177962..81202819(-)


>ENSPTRG00000004129
ATGAATAGTCGCCAGGCTTGGCGGCTCTTGCTCTCCCAAGGCAGAGGAGATCGTTGGGTTTCAAGGCCCCGCGGGCATTT
CTCGCCGGCCCTGCGGAGAGAGTTCTTCACTACCACAACCAAGGAGGGATATGATAGGCGGCCAGTGGATATAACTCCTT
TAGAACAAAGGAAATTAACTTTTGATACCCATGCATTGGTTCAGGACTTGGAAACTCATGGATTTGACAAAACACAAGCA
GAAACAATTGTATCAGCGTTAACTGCTTTATCAAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCA
ACAGGAAATAACAGTACAACAGCTAATGGCTCATTTGGATGCTATCAGGAAAGACATGGTCATCCTAGAGAAAAGTGAAT
TTGCAAATCTGAGAGCAGAGAATGAGAAAATGAAAATTGAATTAGACCAAGTTAAGCAACAACTAATGCATGAAACCAGT
CGAATCAGAGCAGATAATAAACTGGATATCAACTTAGAAAGGAGCAGAGTAACAGATATGTTTACAGATCAAGAAAAGCA
ACTTATGGAAGCAACTACAGAATTTACAAAAAAGGATACTCAAACCAAAAGTATTATTTCAGAGACCAGTAATAAAATTG
ACGCTGAAATTGCTTCCTTAAAAACACTGATGGAATCTAACAAACTTGAGACAATTCGTTATCTTGCAGCTTCGGTGTTT
ACTTGCCTGGCAATAGCATTGGGATTTTATAGATTCTGGAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .92 RPM
SRP007412_cerebellum 8 .28 RPM
SRP007412_heart 8 .16 RPM
SRP007412_kidney 11 .43 RPM
SRP007412_liver 7 .40 RPM
SRP007412_testis 63 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010541 ortholog_one2one 2 retrogenes
retro_chof_1396, retro_chof_780,
Callithrix jacchus ENSCJAG00000014547 ortholog_one2many 1 retrogene
retro_cjac_219,
Homo sapiens ENSG00000137500 ortholog_one2one 1 retrogene
retro_hsap_3050,
Macaca mulatta ENSMMUG00000020154 ortholog_one2one 2 retrogenes
retro_mmul_1880, retro_mmul_773,
Nomascus leucogenys ENSNLEG00000016478 ortholog_one2one 1 retrogene
retro_nleu_1644,
Ochotona princeps ENSOPRG00000004144 ortholog_one2one 2 retrogenes
retro_opri_197, retro_opri_682,
Pongo abelii ENSPPYG00000003736 ortholog_one2one 1 retrogene
retro_pabe_2525,
Pan troglodytes ENSPTRG00000017740 within_species_paralog 1 retrogene
retro_ptro_1200,
Pteropus vampyrus ENSPVAG00000005459 ortholog_one2one 1 retrogene
retro_pvam_614,
Rattus norvegicus ENSRNOG00000009462 ortholog_one2one 1 retrogene
retro_rnor_868,
Tupaia belangeri ENSTBEG00000014665 ortholog_one2one 2 retrogenes
retro_tbel_3436, retro_tbel_4221,
Tarsius syrichta ENSTSYG00000011196 ortholog_one2one 1 retrogene
retro_tsyr_710,
Tursiops truncatus ENSTTRG00000003998 ortholog_one2one 1 retrogene
retro_ttru_445,
Vicugna pacos ENSVPAG00000007753 ortholog_one2one 1 retrogene
retro_vpac_366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1990 90.18 88.19
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Download FASTA sequences of all ENSPTRG00000004129 retrocopies