Parental gene:

PIGF, ENSG00000151665

Aliases:None
Description:phosphatidylinositol glycan anchor biosynthesis, class F [Source:HGNC Symbol;Acc:8962]
Organism:Human (Homo sapiens)
Coordinates:2:46808075..46844258(-)


>ENSG00000151665
ATGAAAGATAACGATATCAAGAGACTACTGTATACCCATCTTTTATGCATATTTTCAATTATCCTAAGTGTCTTCATTCC
ATCACTCTTCTTGGAGAACTTCTCAATATTGGAAACACACTTGACATGGTTGTGCATCTGTTCTGGTTTTGTAACTGCTG
TCAATCTAGTACTATATTTAGTAGTGAAACCAAATACATCCTCTAAAAGAAGTTCATTATCACACAAGGTAACTGGATTT
TTGAAATGCTGTATCTACTTTCTTATGTCTTGTTTCTCCTTTCATGTAATTTTTGTTCTGTATGGAGCACCACTGATAGA
GTTGGCATTGGAAACATTTTTATTTGCAGTTATTTTGTCTACTTTTACTACTGTGCCTTGCTTATGTTTGTTAGGACCAA
ACCTCAAAGCATGGCTAAGAGTGTTCAGTAGAAATGGAGTTACATCCATATGGGAGAATAGTCTCCAGATCACTACAATT
TCTAGCTTTGTAGGAGCATGGCTTGGAGCACTTCCTATTCCACTGGATTGGGAAAGACCATGGCAGGTATGGCCCATCTC
CTGTACGCTTGGAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTCACCACTCTGGATATACTGGAATAGAAAGCAAC
TTACATACAAGAACAATTAA

Library Parental gene expression (RPM)
bodymap2_liver 4 .14 RPM
bodymap2_lung 6 .28 RPM
bodymap2_breast 8 .19 RPM
bodymap2_adipose 4 .11 RPM
bodymap2_adrenal 5 .38 RPM
bodymap2_skeletal_muscle 2 .86 RPM
bodymap2_thyroid 5 .72 RPM
bodymap2_prostate 7 .34 RPM
bodymap2_colon 6 .26 RPM
bodymap2_testis 12 .61 RPM
bodymap2_brain 5 .18 RPM
bodymap2_heart 4 .67 RPM
bodymap2_white_blood_cells 8 .80 RPM
bodymap2_lymph_node 10 .73 RPM
bodymap2_ovary 9 .85 RPM
bodymap2_kidney 12 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028483 ortholog_one2one 1 retrogene
retro_acar_103,
Callithrix jacchus ENSCJAG00000000680 ortholog_one2one 2 retrogenes
retro_cjac_4146, retro_cjac_481,
Dasypus novemcinctus ENSDNOG00000007278 ortholog_one2many 2 retrogenes
retro_dnov_1980, retro_dnov_502,
Dasypus novemcinctus ENSDNOG00000025474 ortholog_one2many 1 retrogene
retro_dnov_602,
Dipodomys ordii ENSDORG00000006083 ortholog_one2one 1 retrogene
retro_dord_234,
Gorilla gorilla ENSGGOG00000024478 ortholog_one2one 3 retrogenes
retro_ggor_2229, retro_ggor_2825, retro_ggor_2988,
Myotis lucifugus ENSMLUG00000008686 ortholog_one2one 1 retrogene
retro_mluc_1471,
Macaca mulatta ENSMMUG00000005389 ortholog_one2one 2 retrogenes
retro_mmul_1173, retro_mmul_2559,
Monodelphis domestica ENSMODG00000000968 ortholog_one2one 1 retrogene
retro_mdom_1771,
Mustela putorius furo ENSMPUG00000012037 ortholog_one2many 1 retrogene
retro_mputfur_810,
Nomascus leucogenys ENSNLEG00000016924 ortholog_one2one 3 retrogenes
retro_nleu_1115, retro_nleu_1455, retro_nleu_2882,
Oryctolagus cuniculus ENSOCUG00000001130 ortholog_one2many 1 retrogene
retro_ocun_618,
Otolemur garnettii ENSOGAG00000026734 ortholog_one2one 1 retrogene
retro_ogar_1699,
Pongo abelii ENSPPYG00000012438 ortholog_one2one 3 retrogenes
retro_pabe_2710, retro_pabe_3450, retro_pabe_3733,
Pan troglodytes ENSPTRG00000011895 ortholog_one2one 2 retrogenes
retro_ptro_2863, retro_ptro_3192,
Ictidomys tridecemlineatus ENSSTOG00000001373 ortholog_one2one 1 retrogene
retro_itri_989,
Tupaia belangeri ENSTBEG00000000891 ortholog_one2one 1 retrogene
retro_tbel_3809,
Tarsius syrichta ENSTSYG00000002842 ortholog_one2one 3 retrogenes
retro_tsyr_1497, retro_tsyr_1556, retro_tsyr_1820,
Vicugna pacos ENSVPAG00000000314 ortholog_one2one 1 retrogene
retro_vpac_478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3277 93.10 84.47
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2. retro_hsap_4217 73.30 100.00
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3. retro_hsap_4801 73.37 82.65
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Download FASTA sequences of all ENSG00000151665 retrocopies