Parental gene:

PIGF, ENSPPYG00000012438

Aliases:None
Description:phosphatidylinositol glycan anchor biosynthesis, class F [Source:HGNC Symbol;Acc:8962]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:64744144..64783026(+)


>ENSPPYG00000012438
ATGAAAGATACCGATATCAAGAGACTACTGTATACCCATCTTTTATGCATATTTTCAATTATCCTAAGTGTCTTCATTCC
ATCACTCTTCTTGGAGAACTTCTCAATATTGGAAACACACTTGACATGGTTGTGCATCTGTTCTGGTTTTGTAACTGCTG
TCAATCTAGTACTATATTTAGTAGTGAAACCAAATACATCCTCTAAAAGAAGTTCATTATCACACAAGGTAACCAGATTT
TTGAAATGCTGTATCTACTTTCTTATGTCTTGTTTCTCCTTTCATGTAATTTTTGTTCTGTATGGAGCACCACTAATAGA
GTTGGCATTGGAAACATTTTTATTTGCAGTTATTTTGTCTGCTTTTACTACTGTGCCTTGCTTATGTTTGTTAGGACCAA
ACCTCAAAGCATGGCTAAGAGTGTTCAGTAGAAATGGAGTTACATCCATATGGGAGAATAGTCTCCAGATCACTACAATT
TCTAGTTTTGTAGGAGCATGGCTTGGAGCACTTCCTATTCCACTGGATTGGGAAAGACCATGGCAGGTATGGCCCATCTC
CTGTACGCTTGGAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTCACCACTCTGGATATACTGGAATAGAAAGCAAC
TTACATACAAGAACAATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .08 RPM
SRP007412_cerebellum 7 .17 RPM
SRP007412_heart 26 .31 RPM
SRP007412_kidney 10 .44 RPM
SRP007412_liver 8 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028483 ortholog_one2one 1 retrogene
retro_acar_103,
Callithrix jacchus ENSCJAG00000000680 ortholog_one2one 2 retrogenes
retro_cjac_4146, retro_cjac_481,
Dasypus novemcinctus ENSDNOG00000007278 ortholog_one2many 2 retrogenes
retro_dnov_1980, retro_dnov_502,
Dasypus novemcinctus ENSDNOG00000025474 ortholog_one2many 1 retrogene
retro_dnov_602,
Dipodomys ordii ENSDORG00000006083 ortholog_one2one 1 retrogene
retro_dord_234,
Homo sapiens ENSG00000151665 ortholog_one2one 3 retrogenes
retro_hsap_3277, retro_hsap_4217, retro_hsap_4801,
Gorilla gorilla ENSGGOG00000024478 ortholog_one2one 3 retrogenes
retro_ggor_2229, retro_ggor_2825, retro_ggor_2988,
Myotis lucifugus ENSMLUG00000008686 ortholog_one2one 1 retrogene
retro_mluc_1471,
Macaca mulatta ENSMMUG00000005389 ortholog_one2one 2 retrogenes
retro_mmul_1173, retro_mmul_2559,
Monodelphis domestica ENSMODG00000000968 ortholog_one2one 1 retrogene
retro_mdom_1771,
Mustela putorius furo ENSMPUG00000012037 ortholog_one2many 1 retrogene
retro_mputfur_810,
Nomascus leucogenys ENSNLEG00000016924 ortholog_one2one 3 retrogenes
retro_nleu_1115, retro_nleu_1455, retro_nleu_2882,
Oryctolagus cuniculus ENSOCUG00000001130 ortholog_one2many 1 retrogene
retro_ocun_618,
Otolemur garnettii ENSOGAG00000026734 ortholog_one2one 1 retrogene
retro_ogar_1699,
Pan troglodytes ENSPTRG00000011895 ortholog_one2one 2 retrogenes
retro_ptro_2863, retro_ptro_3192,
Ictidomys tridecemlineatus ENSSTOG00000001373 ortholog_one2one 1 retrogene
retro_itri_989,
Tupaia belangeri ENSTBEG00000000891 ortholog_one2one 1 retrogene
retro_tbel_3809,
Tarsius syrichta ENSTSYG00000002842 ortholog_one2one 3 retrogenes
retro_tsyr_1497, retro_tsyr_1556, retro_tsyr_1820,
Vicugna pacos ENSVPAG00000000314 ortholog_one2one 1 retrogene
retro_vpac_478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2710 94.63 68.04
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2. retro_pabe_3450 66.89 68.49
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3. retro_pabe_3733 68.90 93.61
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Download FASTA sequences of all ENSPPYG00000012438 retrocopies