Parental gene:

TUBA1A, ENSG00000167552

Aliases:TUBA1A, B-ALPHA-1, LIS3, TUBA3
Description:tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766]
Organism:Human (Homo sapiens)
Coordinates:12:49578578..49583107(-)


>ENSG00000167552
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGATTCCTTCAACACCTTCTTCA
GTGAGACGGGGGCTGGCAAGCATGTGCCCCGGGCAGTGTTTGTAGACTTGGAACCCACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAACTTATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTGTTGGACCGAATTCGCAAGCTGGCCGACCAGTGCACGGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCGCTGCTCATGGAACGTCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCTATTTACCCGGCGCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGTCCAACCTATACTAACCTGAATAGGTTAATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTGGCCAAGGTACAGAGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAACGTGCCTTTGTTCACTGGTACGTTGGGGAGGGGATGGAGGAAGGTGAGTTTTCAGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAGGAAGAAGGAGAGGAATACTAA

Library Parental gene expression (RPM)
bodymap2_liver 5 .58 RPM
bodymap2_lung 83 .42 RPM
bodymap2_breast 120 .64 RPM
bodymap2_adipose 40 .79 RPM
bodymap2_adrenal 138 .19 RPM
bodymap2_skeletal_muscle 10 .97 RPM
bodymap2_thyroid 23 .80 RPM
bodymap2_prostate 127 .93 RPM
bodymap2_colon 124 .87 RPM
bodymap2_testis 88 .18 RPM
bodymap2_brain 685 .29 RPM
bodymap2_heart 57 .28 RPM
bodymap2_white_blood_cells 180 .52 RPM
bodymap2_lymph_node 60 .81 RPM
bodymap2_ovary 189 .07 RPM
bodymap2_kidney 99 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001489 ortholog_one2one 3 retrogenes
retro_btau_251, retro_btau_350, retro_btau_929,
Callithrix jacchus ENSCJAG00000020894 ortholog_one2one 2 retrogenes
retro_cjac_1209, retro_cjac_3157,
Dasypus novemcinctus ENSDNOG00000004121 ortholog_one2one 1 retrogene
retro_dnov_43,
Equus caballus ENSECAG00000013798 ortholog_one2one 1 retrogene
retro_ecab_223,
Homo sapiens ENSG00000123416 within_species_paralog 1 retrogene
retro_hsap_808,
Nomascus leucogenys ENSNLEG00000017836 ortholog_one2many 2 retrogenes
retro_nleu_245, retro_nleu_2757,
Oryctolagus cuniculus ENSOCUG00000027812 ortholog_one2one 1 retrogene
retro_ocun_197,
Pteropus vampyrus ENSPVAG00000004645 ortholog_one2one 2 retrogenes
retro_pvam_1283, retro_pvam_414,
Rattus norvegicus ENSRNOG00000004559 ortholog_one2one 3 retrogenes
retro_rnor_1200, retro_rnor_2006, retro_rnor_446,
Vicugna pacos ENSVPAG00000005749 ortholog_one2one 4 retrogenes
retro_vpac_157, retro_vpac_210, retro_vpac_429, retro_vpac_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3313 79.52 100.00
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Download FASTA sequences of all ENSG00000167552 retrocopies