Parental gene: | Tuba1a, ENSRNOG00000004559 |
| Aliases: | Tuba1a, Tuba1 |
| Description: | Tubulin alpha-1A chain [Source:UniProtKB/Swiss-Prot;Acc:P68370] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | X:115143854..115147552(-) |
>ENSRNOG00000004559
ATGCGTGAGTGTATCTCCATCCACGTCGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGCGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCACGTGCCCCGGGCGGTGTTCGTAGACCTGGAACCCACAGTTATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCAGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACAGAATTCGCAAGCTGGCTGACCAGTGCACGGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGGTTCACCTCCCTGCTGATGGAGCGGCTCTCTGTCGAC
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACTAACTTAAACAGGTTGATAGGTCAAATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCTCGCATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGTGATGTGGTCCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTCCCTGGTGGCGACCTGGCCAAGGTCCAGAGAG
CTGTGTGTATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCCGTGAGGACATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAGGGTGAGGGTGAGGAAGAAGGAGAGGAATACTAA
ATGCGTGAGTGTATCTCCATCCACGTCGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGCGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCACGTGCCCCGGGCGGTGTTCGTAGACCTGGAACCCACAGTTATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCAGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACAGAATTCGCAAGCTGGCTGACCAGTGCACGGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGGTTCACCTCCCTGCTGATGGAGCGGCTCTCTGTCGAC
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACTAACTTAAACAGGTTGATAGGTCAAATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCTCGCATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGTGATGTGGTCCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTCCCTGGTGGCGACCTGGCCAAGGTCCAGAGAG
CTGTGTGTATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCCGTGAGGACATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAGGGTGAGGGTGAGGAAGAAGGAGAGGAATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 17 .82 RPM |
| SRP017611_kidney | 71 .46 RPM |
| SRP017611_brain | 701 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001489 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020894 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000004121 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000013798 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000167552 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017836 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000027812 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000004645 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003597 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000015544 | within_species_paralog | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000005749 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_446 | 94.71 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1200 | 94.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2006 | 94.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000004559 retrocopies