Parental gene: | BT.53243, ENSBTAG00000001489 |
| Aliases: | None |
| Description: | tubulin alpha-1B chain [Source:RefSeq peptide;Acc:NP_001159977] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 5:30821250..30825700(+) |
>ENSBTAG00000001489
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACTATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGGGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAGGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGGGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGCCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTCGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCGACATATACTAACCTGAATAGGCTGATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGGTTTGATGGCGCCCTGAATGTGGATCTGACAGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGGAAATACATGGCCTGCTGCCTGTTGTACCGT
GGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTAAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAATTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAAGGAGAAGGAGAGGAAGAAGGAGAGGAATACTAA
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACTATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGGGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAGGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGGGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGCCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTCGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCGACATATACTAACCTGAATAGGCTGATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGGTTTGATGGCGCCCTGAATGTGGATCTGACAGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGGAAATACATGGCCTGCTGCCTGTTGTACCGT
GGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTAAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAATTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAAGGAGAAGGAGAGGAAGAAGGAGAGGAATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 359 .36 RPM |
| SRP017611_kidney | 19 .68 RPM |
| SRP017611_liver | 4 .68 RPM |
| ERP005899_muscle | 20 .96 RPM |
| ERP005899_liver | 3 .53 RPM |
| SRP030211_testis | 77 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012244 | within_species_paralog | 1 retrogene | |
| Bos taurus | ENSBTAG00000039992 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000020894 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000004121 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000013798 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000167552 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017836 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000027812 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000004645 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000004559 | ortholog_one2one | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000005749 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_251 | 97.28 | 97.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_350 | 81.15 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_929 | 94.52 | 97.12 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000001489 retrocopies