Parental gene:

FNTA, ENSG00000168522

Aliases:FNTA, FPTA, PGGT1A, PTAR2
Description:farnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:3782]
Organism:Human (Homo sapiens)
Coordinates:8:42889336..42940931(+)


>ENSG00000168522
ATGGCGGCCACCGAGGGGGTCGGGGAGGCTGCGCAAGGGGGCGAGCCCGGGCAGCCGGCGCAACCCCCGCCCCAGCCGCA
CCCACCGCCGCCCCAGCAGCAGCACAAGGAAGAGATGGCGGCCGAGGCTGGGGAAGCCGTGGCGTCCCCCATGGACGACG
GGTTTGTGAGCCTGGACTCGCCCTCCTATGTCCTGTACAGGGACAGAGCAGAATGGGCTGATATAGATCCGGTGCCGCAG
AATGATGGCCCCAATCCCGTGGTCCAGATCATTTATAGTGACAAATTTAGAGATGTTTATGATTACTTCCGAGCTGTCCT
GCAGCGTGATGAAAGAAGTGAACGAGCTTTTAAGCTAACCCGGGATGCTATTGAGTTAAATGCAGCCAATTATACAGTGT
GGCATTTCCGGAGAGTTCTTTTGAAGTCACTTCAGAAGGATCTACATGAGGAAATGAACTACATCACTGCAATAATTGAG
GAGCAGCCCAAAAACTATCAAGTTTGGCATCATAGGCGAGTATTAGTGGAATGGCTAAGAGATCCATCTCAGGAGCTTGA
ATTTATTGCTGATATTCTTAATCAGGATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGTTATTCAGGAATTTA
AACTTTGGGATAATGAGCTGCAGTATGTGGACCAACTTCTGAAAGAGGATGTGAGAAATAACTCTGTCTGGAACCAAAGA
TACTTCGTTATTTCTAACACCACTGGCTACAATGATCGTGCTGTATTGGAGAGAGAAGTCCAATACACTCTGGAAATGAT
TAAACTAGTACCACATAATGAAAGTGCATGGAACTATTTGAAAGGGATTTTGCAGGATCGTGGTCTTTCCAAATATCCTA
ATCTGTTAAATCAATTACTTGATTTACAACCAAGTCATAGTTCCCCCTACCTAATTGCCTTTCTTGTGGATATCTATGAA
GACATGCTAGAAAATCAGTGTGACAATAAGGAAGACATTCTTAATAAAGCATTAGAGTTATGTGAAATCCTAGCTAAAGA
AAAGGACACTATAAGAAAGGAATATTGGAGATACATTGGAAGATCCCTTCAAAGCAAACACAGCACAGAAAATGACTCAC
CAACAAATGTACAGCAATAA

Library Parental gene expression (RPM)
bodymap2_liver 25 .22 RPM
bodymap2_lung 48 .15 RPM
bodymap2_breast 73 .31 RPM
bodymap2_adipose 51 .21 RPM
bodymap2_adrenal 60 .24 RPM
bodymap2_skeletal_muscle 54 .56 RPM
bodymap2_thyroid 52 .03 RPM
bodymap2_prostate 83 .26 RPM
bodymap2_colon 76 .28 RPM
bodymap2_testis 71 .17 RPM
bodymap2_brain 54 .71 RPM
bodymap2_heart 38 .64 RPM
bodymap2_white_blood_cells 85 .11 RPM
bodymap2_lymph_node 82 .67 RPM
bodymap2_ovary 54 .26 RPM
bodymap2_kidney 53 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003201 possible_ortholog 2 retrogenes
retro_btau_1431, retro_btau_1768,
Canis familiaris ENSCAFG00000005385 possible_ortholog 1 retrogene
retro_cfam_941,
Erinaceus europaeus ENSEEUG00000008272 ortholog_one2many 1 retrogene
retro_eeur_532,
Loxodonta africana ENSLAFG00000000631 ortholog_one2many 1 retrogene
retro_lafr_506,
Macaca mulatta ENSMMUG00000017158 possible_ortholog 1 retrogene
retro_mmul_1078,
Monodelphis domestica ENSMODG00000010003 ortholog_one2many 1 retrogene
retro_mdom_1656,
Nomascus leucogenys ENSNLEG00000012979 possible_ortholog 1 retrogene
retro_nleu_2408,
Pteropus vampyrus ENSPVAG00000013502 possible_ortholog 2 retrogenes
retro_pvam_1157, retro_pvam_1433,
Sorex araneus ENSSARG00000009660 ortholog_one2many 1 retrogene
retro_sara_109,
Ictidomys tridecemlineatus ENSSTOG00000011626 ortholog_one2many 1 retrogene
retro_itri_1221,
Tursiops truncatus ENSTTRG00000008870 possible_ortholog 1 retrogene
retro_ttru_579,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_805 89.72 74.41
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Download FASTA sequences of all ENSG00000168522 retrocopies