Parental gene:

SDAD1, ENSG00000198301

Aliases:None
Description:SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537]
Organism:Human (Homo sapiens)
Coordinates:4:76862102..76912115(-)


>ENSG00000198301
ATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTA
CATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCA
AAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAG
GTGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATCCAGATCTGCGAATGACATTTTGCAAAGCTTTGATCTTGCT
GAGAAATAAGAATCTCATCAATCCATCAAGCCTGCTAGAACTCTTCTTTGAACTTTTTCGTTGCCATGATAAACTTCTGC
GAAAGACTTTATACACACATATTGTGACTGATATCAAGAATATAAATGCAAAACACAAGAACAATAAAGTGAATGTAGTA
TTGCAAAATTTCATGTACACCATGTTAAGAGATAGCAATGCAACCGCAGCCAAGATGTCTTTAGATGTAATGATTGAACT
CTACAGAAGGAACATCTGGAATGATGCAAAAACTGTCAATGTTATCACAACTGCATGTTTCTCTAAGGTCACCAAGATAT
TAGTTGCCGCTTTGACATTCTTTCTTGGGAAAGATGAAGATGAAAAACAGGACAGTGACTCCGAATCTGAGGATGATGGA
CCAACAGCAAGAGACCTGCTAGTACAATATGCTACAGGGAAGAAAAGTTCCAAAAACAAGAAAAAGTTGGAAAAGGCAAT
GAAAGTGCTCAAGAAACAAAAAAAGAAGAAAAAACCAGAGGTGTTTAACTTTTCAGCCATTCACTTGATTCATGATCCCC
AAGATTTTGCGGAAAAACTACTAAAGCAGCTTGAGTGCTGTAAGGAGAGGTTTGAAGTGAAGATGATGCTCATGAACCTT
ATCTCCAGATTGGTGGGAATTCATGAGCTTTTCCTCTTCAATTTCTATCCCTTTTTGCAAAGGTTTCTGCAGCCCCACCA
AAGAGAAGTAACCAAGATCCTTCTGTTTGCTGCACAAGCATCTCATCACCTAGTACCCCCAGAGATTATTCAATCATTGC
TTATGACTGTGGCAAACAATTTTGTTACCGACAAGAACTCTGGAGAAGTCATGACAGTAGGAATCAATGCTATAAAGGAG
ATAACAGCTCGATGTCCTCTGGCCATGACTGAAGAACTTCTCCAAGACCTGGCTCAGTATAAAACACACAAGGATAAGAA
TGTAATGATGTCTGCTAGAACTTTGATTCACCTCTTCCGAACACTGAATCCTCAGATGCTGCAGAAGAAATTCCGGGGTA
AGCCTACAGAGGCCTCCATAGAAGCAAGAGTACAAGAATATGGAGAATTAGATGCTAAAGATTACATTCCAGGAGCAGAA
GTTCTGGAAGTTGAGAAAGAAGAGAATGCTGAAAATGATGAAGATGGATGGGAAAGTACCAGTCTCAGTGAGGAGGAGGA
TGCTGATGGTGAATGGATTGATGTGCAACACTCTTCCGATGAAGAACAGCAAGAAATCTCCAAGAAGCTGAACAGCATGC
CCATGGAGGAGCGGAAGGCCAAAGCTGCAGCCATCAGCACTAGCCGAGTTTTAACTCAGGAAGACTTCCAGAAAATCCGC
ATGGCCCAAATGAGAAAAGAACTTGATGCTGCCCCCGGGAAATCCCAGAAGAGGAAATACATTGAAATAGACAGTGATGA
AGAGCCCAGGGGTGAATTACTTTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCAAAGTCTGACAAAGAGACAAGAC
TAGCAACTGCAATGGCTGGAAAGACAGACCGAAAAGAATTTGTGAGGAAGAAAACCAAAACAAATCCATTTTCCAGTTCG
ACAAATAAAGAGAAGAAAAAACAGAAGAACTTTATGATGATGCGGTATAGCCAGAATGTCCGGTCAAAAAATAAGCGTTC
CTTCCGAGAAAAACAGTTGGCACTACGAGATGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAA

Library Parental gene expression (RPM)
bodymap2_adipose 27 .29 RPM
bodymap2_adrenal 53 .08 RPM
bodymap2_brain 31 .83 RPM
bodymap2_breast 35 .27 RPM
bodymap2_colon 29 .53 RPM
bodymap2_heart 18 .92 RPM
bodymap2_kidney 40 .18 RPM
bodymap2_liver 19 .52 RPM
bodymap2_lung 15 .95 RPM
bodymap2_lymph_node 24 .93 RPM
bodymap2_ovary 63 .02 RPM
bodymap2_prostate 45 .78 RPM
bodymap2_skeletal_muscle 41 .96 RPM
bodymap2_testis 79 .05 RPM
bodymap2_thyroid 72 .65 RPM
bodymap2_white_blood_cells 62 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000008524 ortholog_one2one 2 retrogenes
retro_cpor_510, retro_cpor_994,
Gorilla gorilla ENSGGOG00000006441 ortholog_one2one 1 retrogene
retro_ggor_1498,
Loxodonta africana ENSLAFG00000012217 possible_ortholog 1 retrogene
retro_lafr_980,
Macaca mulatta ENSMMUG00000017503 ortholog_one2one 1 retrogene
retro_mmul_604,
Nomascus leucogenys ENSNLEG00000027034 ortholog_one2many 1 retrogene
retro_nleu_2410,
Oryctolagus cuniculus ENSOCUG00000026953 ortholog_one2one 1 retrogene
retro_ocun_547,
Pongo abelii ENSPPYG00000014852 ortholog_one2one 1 retrogene
retro_pabe_1777,
Pan troglodytes ENSPTRG00000024399 ortholog_one2one 2 retrogenes
retro_ptro_1388, retro_ptro_2732,
Rattus norvegicus ENSRNOG00000022229 ortholog_one2one 2 retrogenes
retro_rnor_1381, retro_rnor_1967,
Tupaia belangeri ENSTBEG00000005270 ortholog_one2one 1 retrogene
retro_tbel_2414,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2412 91.69 59.39
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2. retro_hsap_4030 90.58 90.54
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Download FASTA sequences of all ENSG00000198301 retrocopies