RetrogeneDB ID: | retro_cpor_994 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_39:752531..753594(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDAD1 | ||
Ensembl ID: | ENSCPOG00000008524 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.26 % |
Parental protein coverage: | 51.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KKKPEVFNFSAIHLIHDPQDFAEKLLRQLENSKERFEVKMMLMNLISRLVGIHELFLFNFYPFLQRFLQP |
KKKPEVFNFSAIHLIHDPQDFAEKLL.QLENSKERFEVKMMLMNLISRLVGIHELFLFNFYPFLQ.FLQP | |
Retrocopy | KKKPEVFNFSAIHLIHDPQDFAEKLLKQLENSKERFEVKMMLMNLISRLVGIHELFLFNFYPFLQSFLQP |
Parental | HQREVTKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKEITARCPLAMTEELLQ |
HQREVTKILLFAAQ.SHH..PP.IIQSLLMTVANNFVTDKNS.EVMTVGINAIKEITA.CPLAMTEELLQ | |
Retrocopy | HQREVTKILLFAAQTSHHFLPPKIIQSLLMTVANNFVTDKNSREVMTVGINAIKEITAQCPLAMTEELLQ |
Parental | DLAQYKTHKDKNVMMSARTLIQLFRTLNPQMLQKKFRGKPTEASVEARVQEYGELDAKDYIPGAEVLEIE |
DLAQYKTHKDKNVM.SARTLIQLFRTLNPQML...FRGKPTEASVEARVQEYGELDAKDY.PGAEVLEIE | |
Retrocopy | DLAQYKTHKDKNVMISARTLIQLFRTLNPQMLXXXFRGKPTEASVEARVQEYGELDAKDYVPGAEVLEIE |
Parental | KEEDAE-NDEGDGWESTSLSEEEEADGEWVDVHHSSDEEQQQEISQKLSSMDTEERKAKAAAVSTSRVLT |
KEEDAE.ND..DGWESTSLSEEE.ADGEWV.VHHSSDEEQQQEIS.KLSSMDTE..KA.AAAVSTSRVLT | |
Retrocopy | KEEDAE>NDK-DGWESTSLSEEEDADGEWVNVHHSSDEEQQQEISRKLSSMDTEKQKA*AAAVSTSRVLT |
Parental | QEDFQKIRMAQMRKELAAAPGKAQKRKYIEIDSDEEPRGELLSLRDIERLHKKPKSDKETRLATAMAGKT |
QEDFQKIRMAQMRKELAAAPGKAQKRKYIEIDSDEEPRGELLSL.DIERLHKKPKSDKETRLATAMAGKT | |
Retrocopy | QEDFQKIRMAQMRKELAAAPGKAQKRKYIEIDSDEEPRGELLSL*DIERLHKKPKSDKETRLATAMAGKT |
Parental | DRKEFV |
DRK.FV | |
Retrocopy | DRKGFV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 20 .88 RPM |
SRP017611_kidney | 0 .10 RPM | 18 .53 RPM |
SRP017611_liver | 0 .09 RPM | 13 .23 RPM |
SRP040447_lung | 0 .05 RPM | 25 .98 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 9 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000008524 | 2 retrocopies |
retro_cpor_510, retro_cpor_994 ,
|
Homo sapiens | ENSG00000198301 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006441 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012217 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017503 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027034 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026953 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014852 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000024399 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022229 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005270 | 1 retrocopy |