Parental gene: | RPS28, ENSG00000233927 |
| Aliases: | None |
| Description: | ribosomal protein S28 [Source:HGNC Symbol;Acc:10418] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 19:8386041..8388224(+) |
>ENSG00000233927
ATGGACACCAGCCGTGTGCAGCCTATCAAGCTGGCCAGGGTCACCAAGGTCCTGGGCAGGACCGGTTCTCAGGGACAGTG
CACGCAGGTGCGCGTGGAATTCATGGACGACACGAGCCGATCCATCATCCGCAATGTAAAAGGCCCCGTGCGCGAGGGCG
ACGTGCTCACCCTTTTGGAGTCAGAGCGAGAAGCCCGGAGGTTGCGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 59 .97 RPM |
| bodymap2_adrenal | 157 .29 RPM |
| bodymap2_brain | 21 .10 RPM |
| bodymap2_breast | 44 .71 RPM |
| bodymap2_colon | 136 .61 RPM |
| bodymap2_heart | 24 .70 RPM |
| bodymap2_kidney | 27 .38 RPM |
| bodymap2_liver | 40 .01 RPM |
| bodymap2_lung | 87 .59 RPM |
| bodymap2_lymph_node | 144 .33 RPM |
| bodymap2_ovary | 60 .16 RPM |
| bodymap2_prostate | 99 .05 RPM |
| bodymap2_skeletal_muscle | 61 .27 RPM |
| bodymap2_testis | 41 .76 RPM |
| bodymap2_thyroid | 40 .73 RPM |
| bodymap2_white_blood_cells | 193 .16 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Loxodonta africana | ENSLAFG00000029923 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000028895 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000003890 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000067288 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000040141 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000042886 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_505 | 74.63 | 97.10 | Please wait, loading  |
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| 2. | retro_hsap_523 | 73.91 | 100.00 | Please wait, loading |
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| 3. | retro_hsap_799 | 100.00 | 100.00 | Please wait, loading |
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| 4. | retro_hsap_1192 | 71.01 | 98.55 | Please wait, loading |
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| 5. | retro_hsap_1352 | 62.90 | 89.86 | Please wait, loading |
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| 6. | retro_hsap_1725 | 98.55 | 100.00 | Please wait, loading |
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| 7. | retro_hsap_2220 | 100.00 | 100.00 | Please wait, loading |
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| 8. | retro_hsap_2279 | 94.00 | 72.46 | Please wait, loading |
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| 9. | retro_hsap_3748 | 85.51 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSG00000233927 retrocopies