Parental gene:

RPL30, ENSOPRG00000007644

Aliases:None
Description:ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_2050:160682..164518(-)


>ENSOPRG00000007644
TTACCTAGGAAAACAAGGAAAAAGTCGCTGGAGTCCATCAACTCGCGGCTCCAGCTGGTGATGAAGAGCGGAAAATACGT
GCTGGGCTACAAGCAGTCCCTGAAGATGATCCGACAGGGCAAGGCGAAGCTGGTCATCCTTGCCAACAACTGCCCGGCCT
TGAGGAAATCTGAAATAGAGTATTATGCCATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGCAATAACATAGAGTTG
GGCACGGCGTGTGGGAAGTACTACAGAGTGTGCACGCTCTCCATCATCGACCCAGGGGACTCTGATATTATTAGAAGCAT
GCCAGAACAGACTGGTGAAAAGTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016047 possible_ortholog 2 retrogenes
retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca ENSAMEG00000000605 possible_ortholog 18 retrogenes
retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus ENSBTAG00000016278 possible_ortholog 2 retrogenes
retro_btau_34, retro_btau_992,
Callithrix jacchus ENSCJAG00000015549 possible_ortholog 4 retrogenes
retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Equus caballus ENSECAG00000021705 possible_ortholog 7 retrogenes
retro_ecab_1094, retro_ecab_227, retro_ecab_406, retro_ecab_508, retro_ecab_599, retro_ecab_63, retro_ecab_945,
Felis catus ENSFCAG00000002165 possible_ortholog 9 retrogenes
retro_fcat_1261, retro_fcat_1391, retro_fcat_1473, retro_fcat_1689, retro_fcat_1872, retro_fcat_323, retro_fcat_45, retro_fcat_49, retro_fcat_754,
Gorilla gorilla ENSGGOG00000005502 possible_ortholog 9 retrogenes
retro_ggor_1416, retro_ggor_1663, retro_ggor_178, retro_ggor_1925, retro_ggor_2661, retro_ggor_2886, retro_ggor_3073, retro_ggor_46, retro_ggor_866,
Loxodonta africana ENSLAFG00000002077 possible_ortholog 2 retrogenes
retro_lafr_122, retro_lafr_882,
Microcebus murinus ENSMICG00000004620 possible_ortholog 3 retrogenes
retro_mmur_258, retro_mmur_644, retro_mmur_693,
Macaca mulatta ENSMMUG00000020073 ortholog_one2one 12 retrogenes
retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Oryctolagus cuniculus ENSOCUG00000017386 possible_ortholog 4 retrogenes
retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Pongo abelii ENSPPYG00000018774 possible_ortholog 4 retrogenes
retro_pabe_1605, retro_pabe_178, retro_pabe_2846, retro_pabe_8,
Rattus norvegicus ENSRNOG00000005975 possible_ortholog 19 retrogenes
retro_rnor_1, retro_rnor_1038, retro_rnor_1631, retro_rnor_1812, retro_rnor_1830, retro_rnor_1876, retro_rnor_1893, retro_rnor_1946, retro_rnor_1975, retro_rnor_2211, retro_rnor_2598, retro_rnor_2636, retro_rnor_2666, retro_rnor_2736, retro_rnor_739, retro_rnor_745, retro_rnor_753, retro_rnor_761, retro_rnor_940,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_662 67.86 97.37
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2. retro_opri_954 55.96 95.61
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3. retro_opri_1087 82.30 99.12
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Download FASTA sequences of all ENSOPRG00000007644 retrocopies