Parental gene:

PSMC1, ENSGGOG00000010620

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:14:71855677..71871813(+)


>ENSGGOG00000010620
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCCGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTATGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCAGTCCTGCTCAACCACAAGGTGCATGCCGTGATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGCGATGGGCCCAAACTCGT
ACGCGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGATGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAGCTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCACATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 84 .11 RPM
SRP007412_cerebellum 52 .64 RPM
SRP007412_heart 38 .62 RPM
SRP007412_kidney 73 .60 RPM
SRP007412_liver 41 .78 RPM
SRP007412_testis 111 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017510 possible_ortholog 2 retrogenes
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2one 1 retrogene
retro_chof_1954,
Callithrix jacchus ENSCJAG00000017701 ortholog_one2one 7 retrogenes
retro_cjac_1152, retro_cjac_1537, retro_cjac_2417, retro_cjac_2433, retro_cjac_4219, retro_cjac_661, retro_cjac_678,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2one 1 retrogene
retro_dnov_2162,
Homo sapiens ENSG00000100764 ortholog_one2one 10 retrogenes
retro_hsap_1090, retro_hsap_1278, retro_hsap_2080, retro_hsap_2658, retro_hsap_2810, retro_hsap_2873, retro_hsap_3323, retro_hsap_3416, retro_hsap_3793, retro_hsap_975,
Macropus eugenii ENSMEUG00000001526 ortholog_one2one 1 retrogene
retro_meug_623,
Microcebus murinus ENSMICG00000016733 ortholog_one2one 7 retrogenes
retro_mmur_1039, retro_mmur_1063, retro_mmur_1245, retro_mmur_1577, retro_mmur_216, retro_mmur_839, retro_mmur_983,
Macaca mulatta ENSMMUG00000022990 ortholog_one2many 1 retrogene
retro_mmul_255,
Nomascus leucogenys ENSNLEG00000017013 ortholog_one2one 10 retrogenes
retro_nleu_1123, retro_nleu_1163, retro_nleu_1589, retro_nleu_1625, retro_nleu_1669, retro_nleu_2318, retro_nleu_2625, retro_nleu_429, retro_nleu_616, retro_nleu_706,
Oryctolagus cuniculus ENSOCUG00000006231 possible_ortholog 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 ortholog_one2many 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 ortholog_one2many 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Pan troglodytes ENSPTRG00000006623 ortholog_one2one 9 retrogenes
retro_ptro_1530, retro_ptro_1904, retro_ptro_1944, retro_ptro_2153, retro_ptro_2321, retro_ptro_2573, retro_ptro_672, retro_ptro_742, retro_ptro_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_780 88.29 70.45
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2. retro_ggor_858 81.92 98.41
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3. retro_ggor_1004 66.42 61.59
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4. retro_ggor_1298 85.36 99.55
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5. retro_ggor_1629 89.16 100.00
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6. retro_ggor_1954 72.55 94.55
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7. retro_ggor_1993 78.62 100.00
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8. retro_ggor_2309 89.82 100.00
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Download FASTA sequences of all ENSGGOG00000010620 retrocopies