Parental gene: | PSMC1, ENSGGOG00000010620 |
| Aliases: | None |
| Description: | None |
| Organism: | Gorilla (Gorilla gorilla) |
| Coordinates: | 14:71855677..71871813(+) |
>ENSGGOG00000010620
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCCGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTATGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCAGTCCTGCTCAACCACAAGGTGCATGCCGTGATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGCGATGGGCCCAAACTCGT
ACGCGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGATGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAGCTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCACATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCCGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTATGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCAGTCCTGCTCAACCACAAGGTGCATGCCGTGATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGCGATGGGCCCAAACTCGT
ACGCGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGATGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAGCTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCACATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 84 .11 RPM |
| SRP007412_cerebellum | 52 .64 RPM |
| SRP007412_heart | 38 .62 RPM |
| SRP007412_kidney | 73 .60 RPM |
| SRP007412_liver | 41 .78 RPM |
| SRP007412_testis | 111 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000017510 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000013595 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017701 | ortholog_one2one | 7 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006458 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100764 | ortholog_one2one | 10 retrogenes | |
| Macropus eugenii | ENSMEUG00000001526 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016733 | ortholog_one2one | 7 retrogenes | |
| Macaca mulatta | ENSMMUG00000022990 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017013 | ortholog_one2one | 10 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006231 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000032343 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025948 | ortholog_one2many | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000006623 | ortholog_one2one | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ggor_780 | 88.29 | 70.45 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ggor_858 | 81.92 | 98.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ggor_1004 | 66.42 | 61.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ggor_1298 | 85.36 | 99.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ggor_1629 | 89.16 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ggor_1954 | 72.55 | 94.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ggor_1993 | 78.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ggor_2309 | 89.82 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSGGOG00000010620 retrocopies