RetrogeneDB ID: | retro_ggor_1298 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 17:40924322..40925642(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSGGOG00000010620 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.36 % |
Parental protein coverage: | 99.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVG-KKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIK |
.GQSQ..GHGP..GKKDDKDKK.KY.PPVPTRV..KKKKKTKG.D.ASKLPLVT.HTQCRLKLLKLERIK | |
Retrocopy | LGQSQGDGHGPRHGKKDDKDKKNKY*PPVPTRVA>KKKKKTKGQDVASKLPLVTLHTQCRLKLLKLERIK |
Parental | DYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFV |
DYLLMEEEFIRNQEQ.K.LEEKQEE..SKVDDLRGTPMSVG.LEEIIDDNHAIVSTSVGSEHY.SILSFV | |
Retrocopy | DYLLMEEEFIRNQEQIKLLEEKQEEGTSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYDSILSFV |
Parental | DKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKA-PQETYADIGGLDNQIQEIKESVELPLTHP |
DKDLLEPGCSVLL.HKVHAVIGVLMDDT.PLVT.MKVEKA.PQETYA..GGLDNQIQEIKES.ELPL.HP | |
Retrocopy | DKDLLEPGCSVLLRHKVHAVIGVLMDDTGPLVTMMKVEKA>PQETYANTGGLDNQIQEIKESMELPLPHP |
Parental | EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA |
EYYEEM..KPPKGVIL.GPPGTGK.L......NQTSATFLRVVGSELI.KYLGDGPKLVR.LF.VAEEHA | |
Retrocopy | EYYEEMDTKPPKGVILCGPPGTGKNLVSQSSSNQTSATFLRVVGSELIRKYLGDGPKLVRQLFQVAEEHA |
Parental | PSIVFIDEIDAIGTKRYDSNSGGEREIQRTM--LELLNQLDGFDSR-GDVKVIMATNRIETLDPALIRPG |
.SI.F.DEI.AIGTKRYDSNSGGEREIQ.TM..LELLNQL.GFDS...DVKVIMAT..IETLDP.LIRPG | |
Retrocopy | LSIMFTDEIEAIGTKRYDSNSGGEREIQQTMLELELLNQLGGFDSG<EDVKVIMATK*IETLDPVLIRPG |
Parental | RIDRKIEFPLPDEKTKKHIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR-ERRMKV |
RID.KIEF..PDEKTKKHIFQIHTSRMTLA.DVTLDDLIMAKDD.SGADIKAICTEAGLMALR...RMK. | |
Retrocopy | RIDKKIEFHPPDEKTKKHIFQIHTSRMTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALR<KHRMKA |
Parental | TNEDFKKSKENVLYKKQEGTPEGL |
TNEDFKKSKE.VLYKK.EG.PEGL | |
Retrocopy | TNEDFKKSKESVLYKKHEGIPEGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 84 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 52 .64 RPM |
SRP007412_heart | 0 .00 RPM | 38 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .60 RPM |
SRP007412_liver | 0 .00 RPM | 41 .78 RPM |
SRP007412_testis | 0 .00 RPM | 111 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3323 |
Pan troglodytes | retro_ptro_2153 |
Pongo abelii | retro_pabe_2737 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017510 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013595 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017701 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006458 | 1 retrocopy | |
Homo sapiens | ENSG00000100764 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000010620 | 8 retrocopies |
retro_ggor_1004, retro_ggor_1298 , retro_ggor_1629, retro_ggor_1954, retro_ggor_1993, retro_ggor_2309, retro_ggor_780, retro_ggor_858,
|
Macropus eugenii | ENSMEUG00000001526 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016733 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000022990 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017013 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006231 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000032343 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025948 | 9 retrocopies | |
Pan troglodytes | ENSPTRG00000006623 | 9 retrocopies |