Parental gene: | PSMC1, ENSPTRG00000006623 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 14:89771776..89787871(+) |
>ENSPTRG00000006623
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAGGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTAATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAGGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTAATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 62 .60 RPM |
| SRP007412_cerebellum | 71 .37 RPM |
| SRP007412_heart | 89 .42 RPM |
| SRP007412_kidney | 64 .20 RPM |
| SRP007412_liver | 80 .20 RPM |
| SRP007412_testis | 139 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000017510 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000013595 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017701 | ortholog_one2one | 7 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006458 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100764 | ortholog_one2one | 10 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010620 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000001526 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016733 | ortholog_one2one | 7 retrogenes | |
| Macaca mulatta | ENSMMUG00000022990 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017013 | ortholog_one2one | 10 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006231 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000032343 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025948 | ortholog_one2many | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_672 | 94.36 | 60.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_742 | 80.64 | 98.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_874 | 68.61 | 61.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1530 | 89.84 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1904 | 73.57 | 90.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1944 | 79.69 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2153 | 86.94 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2321 | 89.59 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2573 | 89.04 | 99.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000006623 retrocopies