Parental gene:

PSMC1, ENSPTRG00000006623

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:14:89771776..89787871(+)


>ENSPTRG00000006623
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAGGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTAATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 62 .60 RPM
SRP007412_cerebellum 71 .37 RPM
SRP007412_heart 89 .42 RPM
SRP007412_kidney 64 .20 RPM
SRP007412_liver 80 .20 RPM
SRP007412_testis 139 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017510 possible_ortholog 2 retrogenes
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2one 1 retrogene
retro_chof_1954,
Callithrix jacchus ENSCJAG00000017701 ortholog_one2one 7 retrogenes
retro_cjac_1152, retro_cjac_1537, retro_cjac_2417, retro_cjac_2433, retro_cjac_4219, retro_cjac_661, retro_cjac_678,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2one 1 retrogene
retro_dnov_2162,
Homo sapiens ENSG00000100764 ortholog_one2one 10 retrogenes
retro_hsap_1090, retro_hsap_1278, retro_hsap_2080, retro_hsap_2658, retro_hsap_2810, retro_hsap_2873, retro_hsap_3323, retro_hsap_3416, retro_hsap_3793, retro_hsap_975,
Gorilla gorilla ENSGGOG00000010620 ortholog_one2one 8 retrogenes
retro_ggor_1004, retro_ggor_1298, retro_ggor_1629, retro_ggor_1954, retro_ggor_1993, retro_ggor_2309, retro_ggor_780, retro_ggor_858,
Macropus eugenii ENSMEUG00000001526 ortholog_one2one 1 retrogene
retro_meug_623,
Microcebus murinus ENSMICG00000016733 ortholog_one2one 7 retrogenes
retro_mmur_1039, retro_mmur_1063, retro_mmur_1245, retro_mmur_1577, retro_mmur_216, retro_mmur_839, retro_mmur_983,
Macaca mulatta ENSMMUG00000022990 ortholog_one2many 1 retrogene
retro_mmul_255,
Nomascus leucogenys ENSNLEG00000017013 ortholog_one2one 10 retrogenes
retro_nleu_1123, retro_nleu_1163, retro_nleu_1589, retro_nleu_1625, retro_nleu_1669, retro_nleu_2318, retro_nleu_2625, retro_nleu_429, retro_nleu_616, retro_nleu_706,
Oryctolagus cuniculus ENSOCUG00000006231 possible_ortholog 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 ortholog_one2many 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 ortholog_one2many 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_672 94.36 60.23
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2. retro_ptro_742 80.64 98.41
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3. retro_ptro_874 68.61 61.59
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4. retro_ptro_1530 89.84 100.00
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5. retro_ptro_1904 73.57 90.23
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6. retro_ptro_1944 79.69 100.00
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7. retro_ptro_2153 86.94 100.00
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8. retro_ptro_2321 89.59 100.00
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9. retro_ptro_2573 89.04 99.32
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Download FASTA sequences of all ENSPTRG00000006623 retrocopies