Parental gene:

SRI, ENSLACG00000000210

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH129612.1:700..17481(-)


>ENSLACG00000000210
ATGGCTTACCCGGGCGGCTACCCTGGAGGCTTCGGCGCAACGTATGGTGCTGCTCCTGGAGCCCCTGGAATCCATGGTCA
GGCACAGGACCCCCTGTTTGGTTACTTTTCTGCAGTAGCTGGTTCAGATGGACAGATTGATGCTTCAGAACTGCAGATGT
GTCTCACCCAATCTGGCATTAGTGGAGGTTATAAGCCATTCAATTTGGAAACCTGCAGGCTTATGATTGGCATGTTGGAT
AGAGACTTTTCTGGCAAAATGGGCTTCAATGAATTTAAGGAACTCTGGACTGCATTAAATGGTTGGAAACAGAACTTTAT
GGGTTTTGACAGAGATCAGAGTGGCACAGTAGAGCCTCAGGAACTACACCAAGCCATTACTTCCATGGGGTATAGACTGA
GTCCTCAAGCATTCAATGTGATAGTACATCGCTACGGCATCAACGGAAAGGTTGCATTTGACGATTTTGTGGCTTGCTGT
GTGAAACTCCGTGTCTTAACTGGTATAGAATTTACTTACCTTTTTAAATCTCTTCCAGCTTATAATTTGTTCTCTGTGTG
TGGGTTTGTTTGTTTTTTTAATCTCAAATGGCAGTGTTGGCTTTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 3 .87 RPM
DRP000627_kidney 1 .55 RPM
DRP000627_pelvic_fin 8 .07 RPM
DRP000627_pharynx 0 .48 RPM
DRP000627_gill 2 .21 RPM
DRP000627_tail_muscle 0 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001855 ortholog_one2one 1 retrogene
retro_cfam_498,
Cavia porcellus ENSCPOG00000010096 ortholog_one2one 1 retrogene
retro_cpor_216,
Loxodonta africana ENSLAFG00000027380 ortholog_one2one 2 retrogenes
retro_lafr_1186, retro_lafr_487,
Monodelphis domestica ENSMODG00000010355 ortholog_one2one 1 retrogene
retro_mdom_782,
Mustela putorius furo ENSMPUG00000018313 ortholog_one2one 1 retrogene
retro_mputfur_1147,
Pteropus vampyrus ENSPVAG00000007438 ortholog_one2one 2 retrogenes
retro_pvam_1112, retro_pvam_734,
Rattus norvegicus ENSRNOG00000049780 ortholog_one2one 1 retrogene
retro_rnor_1237,
Ictidomys tridecemlineatus ENSSTOG00000004372 ortholog_one2one 1 retrogene
retro_itri_607,
Tupaia belangeri ENSTBEG00000004434 ortholog_one2one 1 retrogene
retro_tbel_4493,
Tarsius syrichta ENSTSYG00000014640 ortholog_one2many 1 retrogene
retro_tsyr_1832,
Xenopus tropicalis ENSXETG00000008793 ortholog_one2one 1 retrogene
retro_xtro_25,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_89 79.63 80.60
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Download FASTA sequences of all ENSLACG00000000210 retrocopies