RetrogeneDB ID: | retro_lafr_1186 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_843:13295..13829(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRI | ||
Ensembl ID: | ENSLAFG00000027380 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.02 % |
Parental protein coverage: | 89.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLT-QSGIAGG-YKPFNLETCRLMVSMLDRDMS |
G.P.G.A.P.QTQDPL.GYFA.VA.QD.QIDADELQRCLT...G...G.YKPF.LETC.L..SMLD..MS | |
Retrocopy | GTPRGSALPRQTQDPLHGYFAPVARQDRQIDADELQRCLT<SQGLPEG<YKPFSLETCWLIISMLDSGMS |
Parental | GTMGFNEFKELWSVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFD |
GT.GFNEFKE.W.VLNGWRQHFISFDS.RSGTV..Q.LQKALTTMGFRL.PQA.NSIAKRYSTNGKITFD | |
Retrocopy | GTIGFNEFKEPWAVLNGWRQHFISFDSYRSGTVGLQKLQKALTTMGFRLRPQALNSIAKRYSTNGKITFD |
Parental | DYIACCVKLRALTDSFRRR-DTGQQGVVNFPYDDFIQCVMSV |
D.IACC.KLR.LTDSFRR...TGQ.GVVNFPYDDFI.CVM.V | |
Retrocopy | DCIACCIKLRSLTDSFRRQ<ETGQLGVVNFPYDDFIYCVMNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001855 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010096 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000000210 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027380 | 2 retrocopies |
retro_lafr_1186 , retro_lafr_487,
|
Monodelphis domestica | ENSMODG00000010355 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018313 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007438 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000049780 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004372 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004434 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014640 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000008793 | 1 retrocopy |