Parental gene:

RPS3, ENSMMUG00000009019

Aliases:None
Description:40S ribosomal protein S3 [Source:RefSeq peptide;Acc:NP_001253219]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:14:73579678..73602903(+)


>ENSMMUG00000009019
ATGGCCGTGCAAATTTCCAAGAAGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATGAGTTTCTTACTCG
GGAGCTGGCTGAAGATGGCTACTCTGGAGTTGAGGTGCGAGTTACACCAACCAGGACAGAAATCATTATCTTAGCCACCA
GAACACAGAATGTTCTTGGTGAGAAGGGCCGGCGGATTCGGGAACTGACTGCTGTAGTTCAGAAGAGGTTTGGCTTTCCA
GAGGGCAGTGTAGAGCTTTATGCTGAAAAGGTGGCCACTAGAGGTCTGTGTGCCATTGCCCAGGCAGAGTCTCTGCGTTA
CAAACTCCTAGGAGGGCTTGCTGTGCGGAGGGCCTGCTATGGTGTGCTGCGGTTCATCATGGAGAGCGGGGCCAAAGGCT
GCGAGGTCGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCCTGATGATCCACAGC
GGAGACCCTGTTAACTACTACGTTGACACTGCTGTGCGCCATGTGTTGCTCAGACAGGGTGTGCTGGGCATCAAGGTGAA
GATCATGCTGCCCTGGGACCCAACTGGTAAGATTGGCCCTAAGAAGCCCCTGCCTGACCATGTGAGCATCGTGGAACCCA
AAGATGAAATACTGCCTACCACTCCCATCTCAGAACAGAAGGGTGGGAAGCCAGAGCCGCCTGCCATGCCCCAGCCAGTC
CCCACAGCATAA

Library Parental gene expression (RPM)
SRP007412_brain 136 .25 RPM
SRP007412_brain_prefrontal_cortex 260 .92 RPM
SRP007412_cerebellum 127 .34 RPM
SRP007412_heart 247 .85 RPM
SRP007412_kidney 166 .78 RPM
SRP007412_liver 259 .23 RPM
SRP007412_testis 128 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017051 ortholog_one2many 2 retrogenes
retro_amel_1483, retro_amel_465,
Bos taurus ENSBTAG00000005620 ortholog_one2one 4 retrogenes
retro_btau_1626, retro_btau_425, retro_btau_909, retro_btau_924,
Canis familiaris ENSCAFG00000005402 ortholog_one2one 2 retrogenes
retro_cfam_1411, retro_cfam_1569,
Choloepus hoffmanni ENSCHOG00000005328 ortholog_one2one 8 retrogenes
retro_chof_1301, retro_chof_1369, retro_chof_1492, retro_chof_199, retro_chof_2477, retro_chof_2506, retro_chof_452, retro_chof_571,
Callithrix jacchus ENSCJAG00000015424 ortholog_one2many 4 retrogenes
retro_cjac_2355, retro_cjac_2593, retro_cjac_388, retro_cjac_3963,
Cavia porcellus ENSCPOG00000004665 ortholog_one2many 1 retrogene
retro_cpor_995,
Dipodomys ordii ENSDORG00000002974 ortholog_one2one 2 retrogenes
retro_dord_608, retro_dord_758,
Equus caballus ENSECAG00000013915 ortholog_one2many 2 retrogenes
retro_ecab_588, retro_ecab_96,
Echinops telfairi ENSETEG00000015500 ortholog_one2one 3 retrogenes
retro_etel_1225, retro_etel_1757, retro_etel_857,
Felis catus ENSFCAG00000011942 ortholog_one2many 3 retrogenes
retro_fcat_1462, retro_fcat_1490, retro_fcat_981,
Homo sapiens ENSG00000149273 ortholog_one2one 4 retrogenes
retro_hsap_1124, retro_hsap_1655, retro_hsap_2736, retro_hsap_3552,
Gorilla gorilla ENSGGOG00000006519 ortholog_one2many 4 retrogenes
retro_ggor_1248, retro_ggor_1509, retro_ggor_216, retro_ggor_878,
Loxodonta africana ENSLAFG00000004297 ortholog_one2one 3 retrogenes
retro_lafr_278, retro_lafr_600, retro_lafr_861,
Macropus eugenii ENSMEUG00000011581 ortholog_one2one 4 retrogenes
retro_meug_1724, retro_meug_399, retro_meug_431, retro_meug_774,
Myotis lucifugus ENSMLUG00000004079 ortholog_one2many 3 retrogenes
retro_mluc_1092, retro_mluc_680, retro_mluc_934,
Monodelphis domestica ENSMODG00000006945 ortholog_one2one 1 retrogene
retro_mdom_304,
Mustela putorius furo ENSMPUG00000009197 ortholog_one2one 3 retrogenes
retro_mputfur_412, retro_mputfur_443, retro_mputfur_936,
Mus musculus ENSMUSG00000030744 ortholog_one2one 2 retrogenes
retro_mmus_1453, retro_mmus_1776,
Nomascus leucogenys ENSNLEG00000026915 ortholog_one2many 2 retrogenes
retro_nleu_103, retro_nleu_236,
Oryctolagus cuniculus ENSOCUG00000022412 possible_ortholog 3 retrogenes
retro_ocun_11, retro_ocun_1934, retro_ocun_787,
Otolemur garnettii ENSOGAG00000005318 ortholog_one2one 7 retrogenes
retro_ogar_1180, retro_ogar_1354, retro_ogar_1559, retro_ogar_1574, retro_ogar_2577, retro_ogar_2786, retro_ogar_999,
Pongo abelii ENSPPYG00000003688 ortholog_one2one 4 retrogenes
retro_pabe_1367, retro_pabe_2274, retro_pabe_2933, retro_pabe_929,
Pteropus vampyrus ENSPVAG00000011271 ortholog_one2one 1 retrogene
retro_pvam_1388,
Rattus norvegicus ENSRNOG00000017418 ortholog_one2many 3 retrogenes
retro_rnor_2328, retro_rnor_283, retro_rnor_930,
Sarcophilus harrisii ENSSHAG00000011198 ortholog_one2one 1 retrogene
retro_shar_705,
Sus scrofa ENSSSCG00000014855 ortholog_one2one 4 retrogenes
retro_sscr_283, retro_sscr_556, retro_sscr_568, retro_sscr_900,
Tupaia belangeri ENSTBEG00000007053 ortholog_one2one 4 retrogenes
retro_tbel_1194, retro_tbel_2090, retro_tbel_265, retro_tbel_4262,
Tursiops truncatus ENSTTRG00000005858 ortholog_one2one 5 retrogenes
retro_ttru_1108, retro_ttru_1413, retro_ttru_1927, retro_ttru_50, retro_ttru_544,
Vicugna pacos ENSVPAG00000011615 ortholog_one2one 2 retrogenes
retro_vpac_131, retro_vpac_145,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_665 60.80 50.62
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2. retro_mmul_871 88.73 83.13
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3. retro_mmul_1166 94.65 100.00
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4. retro_mmul_1634 90.95 100.00
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5. retro_mmul_1779 83.11 60.49
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6. retro_mmul_1816 85.93 81.07
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Download FASTA sequences of all ENSMMUG00000009019 retrocopies