Parental gene:

TPM3, ENSMMUG00000010805

Aliases:None
Description:tropomyosin alpha-3 chain [Source:RefSeq peptide;Acc:NP_001244772]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:132673601..132711055(-)


>ENSMMUG00000010805
ATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGATAAGGAGAATGCTCTGGATCGGGCAGAGCAAGCTGA
AGCTGAGCAGAAGCAGGCAGAAGAAAGAAGTAAACAGCTGGAGGATGAGCTGGCAGCCATGCAGAAGAAACTGAAAGGGA
CAGAGGATGAGCTGGACAAGTATTCAGAAGCTTTGAAGGATGCCCAGGAGAAGCTGGAACTGGCAGAGAAGAAGGCTGCT
GATGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCTCAGGAGCGGCT
GGCCACTGCCCTGCAAAAACTGGAAGAAGCAGAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACC
GGGCCTTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGAT
AGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAACGCACAGAGGAACGAGCTGAGCTGGC
AGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGA
AGTACTCTCAAAAAGAAGACAAATATGAGGAAGAGATCAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCT
GAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACTTGGAAGATGAGCTCTATGCCCAGAAACTGAA
GTACAAGGCCATTAGCGAGGAACTGGACCACGCCCTCAATGACATGACCTCTATATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 177 .78 RPM
SRP007412_brain 140 .51 RPM
SRP007412_cerebellum 57 .08 RPM
SRP007412_heart 39 .28 RPM
SRP007412_kidney 86 .03 RPM
SRP007412_liver 36 .89 RPM
SRP007412_testis 60 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011877 ortholog_one2one 2 retrogenes
retro_amel_1017, retro_amel_1212,
Bos taurus ENSBTAG00000033217 ortholog_one2one 3 retrogenes
retro_btau_1166, retro_btau_210, retro_btau_933,
Canis familiaris ENSCAFG00000017311 ortholog_one2one 4 retrogenes
retro_cfam_1278, retro_cfam_1678, retro_cfam_2089, retro_cfam_983,
Cavia porcellus ENSCPOG00000007279 ortholog_one2one 1 retrogene
retro_cpor_150,
Dasypus novemcinctus ENSDNOG00000019156 ortholog_one2one 7 retrogenes
retro_dnov_1322, retro_dnov_1767, retro_dnov_329, retro_dnov_451, retro_dnov_848, retro_dnov_878, retro_dnov_944,
Equus caballus ENSECAG00000010942 ortholog_one2one 1 retrogene
retro_ecab_390,
Felis catus ENSFCAG00000012596 ortholog_one2one 1 retrogene
retro_fcat_1441,
Homo sapiens ENSG00000143549 ortholog_one2one 9 retrogenes
retro_hsap_1482, retro_hsap_1639, retro_hsap_2001, retro_hsap_2011, retro_hsap_2012, retro_hsap_2237, retro_hsap_2395, retro_hsap_3711, retro_hsap_3893,
Myotis lucifugus ENSMLUG00000013331 ortholog_one2one 1 retrogene
retro_mluc_1038,
Mustela putorius furo ENSMPUG00000007875 ortholog_one2one 1 retrogene
retro_mputfur_604,
Mus musculus ENSMUSG00000027940 ortholog_one2one 1 retrogene
retro_mmus_21,
Oryctolagus cuniculus ENSOCUG00000011821 ortholog_one2one 2 retrogenes
retro_ocun_699, retro_ocun_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_314 79.67 99.19
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2. retro_mmul_880 96.12 93.55
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3. retro_mmul_1019 85.81 61.29
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4. retro_mmul_1240 92.74 100.00
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5. retro_mmul_1384 78.40 100.00
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6. retro_mmul_1385 82.47 100.00
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7. retro_mmul_1703 81.38 58.06
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8. retro_mmul_1829 85.19 97.58
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9. retro_mmul_2128 76.99 95.56
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10. retro_mmul_2354 74.81 52.82
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Download FASTA sequences of all ENSMMUG00000010805 retrocopies