RetrogeneDB ID: | retro_mmul_880 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:73728787..73729483(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000018252 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM3 | ||
Ensembl ID: | ENSMMUG00000010805 | ||
Aliases: | None | ||
Description: | tropomyosin alpha-3 chain [Source:RefSeq peptide;Acc:NP_001244772] |
Percent Identity: | 96.12 % |
Parental protein coverage: | 93.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERL |
MAGITTIEAVK.KIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLN.RIQLVEEELD.AQERL | |
Retrocopy | MAGITTIEAVKLKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNHRIQLVEEELDCAQERL |
Parental | ATALQKLEEAEKAADESERCMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDL |
ATALQKLEE.EKA.DESERCMKVIENRALKDEEKM.LQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDL | |
Retrocopy | ATALQKLEEVEKAVDESERCMKVIENRALKDEEKMKLQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDL |
Parental | ERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSV |
ERTEE.AELAESRCREMDEQIRLMDQNLKCLSA.EEKY.QKEDKYEEEIKILTDKLKEAETRAEFAERSV | |
Retrocopy | ERTEEQAELAESRCREMDEQIRLMDQNLKCLSAVEEKYTQKEDKYEEEIKILTDKLKEAETRAEFAERSV |
Parental | AKLEKTIDDLEDKLKCTKEEHL |
AKLEKTIDDLEDKLKCTKEEHL | |
Retrocopy | AKLEKTIDDLEDKLKCTKEEHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 140 .51 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 177 .78 RPM |
SRP007412_cerebellum | 0 .06 RPM | 57 .08 RPM |
SRP007412_heart | 0 .00 RPM | 39 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 86 .03 RPM |
SRP007412_liver | 0 .08 RPM | 36 .89 RPM |
SRP007412_testis | 0 .08 RPM | 60 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011877 | 2 retrocopies | |
Bos taurus | ENSBTAG00000033217 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000017311 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000007279 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019156 | 7 retrocopies | |
Equus caballus | ENSECAG00000010942 | 1 retrocopy | |
Felis catus | ENSFCAG00000012596 | 1 retrocopy | |
Homo sapiens | ENSG00000143549 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000013331 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010805 | 10 retrocopies |
retro_mmul_1019, retro_mmul_1240, retro_mmul_1384, retro_mmul_1385, retro_mmul_1703, retro_mmul_1829, retro_mmul_2128, retro_mmul_2354, retro_mmul_314, retro_mmul_880 ,
|
Mustela putorius furo | ENSMPUG00000007875 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027940 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011821 | 2 retrocopies |