RetrogeneDB ID: | retro_btau_1166 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 29:272263..273007(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046335 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM3 | ||
Ensembl ID: | ENSBTAG00000033217 | ||
Aliases: | None | ||
Description: | Tropomyosin alpha-3 chain [Source:UniProtKB/Swiss-Prot;Acc:Q5KR47] |
Percent Identity: | 96.37 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERL |
MAGI.TIEAVKRKIQVLQQQADDA.ERAERLQREVEGE.RAREQAEAEVASLNRRIQLVEEELDRAQERL | |
Retrocopy | MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQERL |
Parental | ATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDL |
ATALQKLEEAEKAADESERGMKVIEN.ALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVII.GDL | |
Retrocopy | ATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIDGDL |
Parental | ERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSV |
E.TEERAELAESRCREMDEQI.LMDQNLKCLSAAEEKYSQKEDKY.EEIKILTDKLKEAETRAEFAER.V | |
Retrocopy | EGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEIKILTDKLKEAETRAEFAERLV |
Parental | AKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM |
AKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM | |
Retrocopy | AKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 92 .57 RPM |
ERP005899_muscle | 0 .32 RPM | 401 .94 RPM |
SRP017611_brain | 0 .09 RPM | 99 .40 RPM |
SRP017611_kidney | 0 .18 RPM | 134 .25 RPM |
SRP017611_liver | 0 .08 RPM | 82 .08 RPM |
SRP030211_testis | 0 .20 RPM | 97 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011877 | 2 retrocopies | |
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Bos taurus | ENSBTAG00000033217 | 3 retrocopies |
retro_btau_1166 , retro_btau_210, retro_btau_933,
|
Canis familiaris | ENSCAFG00000017311 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000007279 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019156 | 7 retrocopies | |
Equus caballus | ENSECAG00000010942 | 1 retrocopy | |
Felis catus | ENSFCAG00000012596 | 1 retrocopy | |
Homo sapiens | ENSG00000143549 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000013331 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010805 | 10 retrocopies | |
Mustela putorius furo | ENSMPUG00000007875 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027940 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011821 | 2 retrocopies |