Parental gene:

Tpm3, ENSMUSG00000027940

Aliases:Tpm3, Tm5NM, Tpm-5, Tpm5, Trop-5, gamma-TM, hTM30nm, hTMnm
Description:tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:1890149]
Organism:Mouse (Mus musculus)
Coordinates:3:90072648..90100902(+)


>ENSMUSG00000027940
ATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAAGAGAATGTTCTGGACCGAGCTGAGCAAGCTGAAGC
TGAGCAGAAACAGGCAGAAGAAAGAAGCAAGCAGCTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAG
AGGATGAGCTGGACAAGTATTCGGAAGCTTTAAAGGATGCTCAGGAGAAGCTGGAGCTAGCAGAGAAGAAGGCAGCCGAC
GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGC
CACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAATCGGG
CTCTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGG
AAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGA
GTCCCGTTGCCGAGAGATGGATGAACAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGT
ACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAG
TTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGAAGATAAACTGAAGTGCACCAAAGAGGAGCA
TCTCTGTACACAAAGGATGCTGGACCAGACCCTGCTGGACCTGAACGAGATGTAG

Library Parental gene expression (RPM)
SRP007412_brain 69 .20 RPM
SRP007412_cerebellum 48 .59 RPM
SRP007412_heart 34 .40 RPM
SRP007412_kidney 59 .56 RPM
SRP007412_liver 38 .18 RPM
SRP007412_testis 37 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011877 ortholog_one2one 2 retrogenes
retro_amel_1017, retro_amel_1212,
Bos taurus ENSBTAG00000033217 ortholog_one2one 3 retrogenes
retro_btau_1166, retro_btau_210, retro_btau_933,
Canis familiaris ENSCAFG00000017311 ortholog_one2one 4 retrogenes
retro_cfam_1278, retro_cfam_1678, retro_cfam_2089, retro_cfam_983,
Cavia porcellus ENSCPOG00000007279 ortholog_one2one 1 retrogene
retro_cpor_150,
Dasypus novemcinctus ENSDNOG00000019156 ortholog_one2one 7 retrogenes
retro_dnov_1322, retro_dnov_1767, retro_dnov_329, retro_dnov_451, retro_dnov_848, retro_dnov_878, retro_dnov_944,
Equus caballus ENSECAG00000010942 ortholog_one2one 1 retrogene
retro_ecab_390,
Felis catus ENSFCAG00000012596 ortholog_one2one 1 retrogene
retro_fcat_1441,
Homo sapiens ENSG00000143549 ortholog_one2one 9 retrogenes
retro_hsap_1482, retro_hsap_1639, retro_hsap_2001, retro_hsap_2011, retro_hsap_2012, retro_hsap_2237, retro_hsap_2395, retro_hsap_3711, retro_hsap_3893,
Myotis lucifugus ENSMLUG00000013331 ortholog_one2one 1 retrogene
retro_mluc_1038,
Macaca mulatta ENSMMUG00000010805 ortholog_one2one 10 retrogenes
retro_mmul_1019, retro_mmul_1240, retro_mmul_1384, retro_mmul_1385, retro_mmul_1703, retro_mmul_1829, retro_mmul_2128, retro_mmul_2354, retro_mmul_314, retro_mmul_880,
Mustela putorius furo ENSMPUG00000007875 ortholog_one2one 1 retrogene
retro_mputfur_604,
Mus musculus ENSMUSG00000031799 within_species_paralog 1 retrogene
retro_mmus_1625,
Oryctolagus cuniculus ENSOCUG00000011821 ortholog_one2one 2 retrogenes
retro_ocun_699, retro_ocun_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_21 99.19 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000027940 retrocopies