Parental gene:

MMU.4980, ENSMMUG00000012989

Aliases:HNRNPA1, HNRPA1, hnRNP A1
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:51387561..51392055(+)


>ENSMMUG00000012989
CTTCCCCCACTCCAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACCGA
TGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGTT
CCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGAC
GGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCAAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGAT
ATTTGTTGGTGGCATTAAAGAAGACACCGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGGAAAATTGAAGTGA
TTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGAT
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGGAAAGCCCTGTCAAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTCGGTGGGAATG
ACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTA
TGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG
GCGGAGGCGGCTTTGGCGGTGGTAGTGGTAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAAT
CAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGTCAATA
CTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAA

Library Parental gene expression (RPM)
SRP007412_brain 72 .61 RPM
SRP007412_brain_prefrontal_cortex 144 .14 RPM
SRP007412_cerebellum 88 .27 RPM
SRP007412_heart 141 .68 RPM
SRP007412_kidney 70 .66 RPM
SRP007412_liver 68 .12 RPM
SRP007412_testis 87 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006580 ortholog_one2one 16 retrogenes
retro_cfam_1080, retro_cfam_1081, retro_cfam_1170, retro_cfam_1323, retro_cfam_1616, retro_cfam_1844, retro_cfam_2017, retro_cfam_2128, retro_cfam_360, retro_cfam_564, retro_cfam_702, retro_cfam_803, retro_cfam_839, retro_cfam_855, retro_cfam_892, retro_cfam_937,
Dasypus novemcinctus ENSDNOG00000009228 ortholog_one2many 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Macaca mulatta ENSMMUG00000001858 within_species_paralog 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Otolemur garnettii ENSOGAG00000029707 ortholog_one2many 3 retrogenes
retro_ogar_1721, retro_ogar_205, retro_ogar_2321,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_187 67.04 70.70
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2. retro_mmul_1031 78.66 83.22
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3. retro_mmul_1427 75.86 61.83
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4. retro_mmul_1726 59.26 79.03
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5. retro_mmul_1871 75.68 76.22
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Download FASTA sequences of all ENSMMUG00000012989 retrocopies