Parental gene:

HNRNPA1L2, ENSDNOG00000009228

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_993:75371..79366(+)


>ENSDNOG00000009228
ATGTCTAAGTCAGAGTCTCCTAAAGAGCCGGAACAGCTGCGGAAGCTCTTCATCGGAGGATTAAGCTTTGAAACAACCGA
TGAGAGTCTGAGAAGCCATTTTGAGCAATGGGGAACACTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGGTTTGTCACGTATGCCACTGTGGAGGAAGTGGATGCAGCCATGAATGCAAGGCCACACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCTGTCTCAAGAGAAGATTCCCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGAT
CTTCGTTGGTGGTATTAAAGAAGACACTGAAGAGCATCACCTAAGAGATTATTTTGAGCAGTATGGGAAAATTGAAGTAA
TTGAAATCATGACTGACCGAGGCAGTGGCAAGAAGAGAGGCTTTGCTTTTGTAACCTTTGATGACCATGACTCTGTGGAT
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCCCTGTCTAAGCAAGAGATGGC
CAGTGCTTCATCCAGCCAAAGAGGTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAAT
CAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAACTTTGGAGGCAGAAGCTCTGGCCCTTATGGGGGTGGAGGCCAATA
CTTTGCCAAACCACGAAATCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTACGGCAGTGGCAGAAGGTTTTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 177 .55 RPM
SRP012922_cerebellum 128 .12 RPM
SRP012922_heart 62 .65 RPM
SRP012922_kidney 56 .95 RPM
SRP012922_liver 49 .54 RPM
SRP012922_lung 170 .14 RPM
SRP012922_quadricep_muscle 55 .21 RPM
SRP012922_spleen 188 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000717 ortholog_one2many 3 retrogenes
retro_amel_1726, retro_amel_547, retro_amel_925,
Canis familiaris ENSCAFG00000006580 ortholog_one2many 16 retrogenes
retro_cfam_1080, retro_cfam_1081, retro_cfam_1170, retro_cfam_1323, retro_cfam_1616, retro_cfam_1844, retro_cfam_2017, retro_cfam_2128, retro_cfam_360, retro_cfam_564, retro_cfam_702, retro_cfam_803, retro_cfam_839, retro_cfam_855, retro_cfam_892, retro_cfam_937,
Dasypus novemcinctus ENSDNOG00000003887 other_paralog 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Dasypus novemcinctus ENSDNOG00000012928 other_paralog 1 retrogene
retro_dnov_1978,
Dasypus novemcinctus ENSDNOG00000019022 within_species_paralog 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Loxodonta africana ENSLAFG00000029587 ortholog_one2many 5 retrogenes
retro_lafr_1202, retro_lafr_1208, retro_lafr_192, retro_lafr_747, retro_lafr_961,
Myotis lucifugus ENSMLUG00000000648 ortholog_one2many 3 retrogenes
retro_mluc_2503, retro_mluc_342, retro_mluc_82,
Macaca mulatta ENSMMUG00000012989 ortholog_one2many 5 retrogenes
retro_mmul_1031, retro_mmul_1427, retro_mmul_1726, retro_mmul_187, retro_mmul_1871,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Otolemur garnettii ENSOGAG00000029707 ortholog_one2many 3 retrogenes
retro_ogar_1721, retro_ogar_205, retro_ogar_2321,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Procavia capensis ENSPCAG00000001867 ortholog_one2one 5 retrogenes
retro_pcap_111, retro_pcap_162, retro_pcap_377, retro_pcap_424, retro_pcap_435,
Pongo abelii ENSPPYG00000025850 ortholog_one2one 4 retrogenes
retro_pabe_1765, retro_pabe_2285, retro_pabe_3492, retro_pabe_3835,
Ictidomys tridecemlineatus ENSSTOG00000006551 ortholog_one2one 8 retrogenes
retro_itri_1291, retro_itri_1567, retro_itri_190, retro_itri_354, retro_itri_439, retro_itri_446, retro_itri_456, retro_itri_515,
Tursiops truncatus ENSTTRG00000004505 ortholog_one2one 27 retrogenes
retro_ttru_1202, retro_ttru_1223, retro_ttru_1251, retro_ttru_1331, retro_ttru_1362, retro_ttru_156, retro_ttru_157, retro_ttru_1678, retro_ttru_1732, retro_ttru_1806, retro_ttru_1813, retro_ttru_1874, retro_ttru_221, retro_ttru_311, retro_ttru_479, retro_ttru_599, retro_ttru_605, retro_ttru_607, retro_ttru_620, retro_ttru_63, retro_ttru_678, retro_ttru_708, retro_ttru_812, retro_ttru_882, retro_ttru_902, retro_ttru_926, retro_ttru_981,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_250 57.51 50.54
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_dnov_320 78.76 51.34
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_dnov_374 76.92 51.88
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_dnov_1059 76.14 52.15
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_dnov_1670 84.46 51.61
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_dnov_1944 79.19 52.42
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_dnov_2081 79.19 52.42
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000009228 retrocopies