RetrogeneDB ID: | retro_dnov_250 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_30:288153..288706(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSDNOG00000009228 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
Percent Identity: | 57.51 % |
Parental protein coverage: | 50.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF-VTYATVEEVD |
MS.SESPK...........GLSFETT..SLR.HFEQ.GT.T.......P..K.S...G..VTYA.VE..D | |
Retrocopy | MSNSESPKY-QRAAETIAQGLSFETTYGSLRNHFEQ*GTFTNSMAIGNPDSKASSALGL<VTYASVEQMD |
Parental | AA-MNARPHKVDGRVVEPK-RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM |
...MNARP.KVDGRV.E.K.R.VSR.DSQRPG....VKKIFVGGIKEDTEEHH........GKI.VI.I. | |
Retrocopy | ES<MNARPPKVDGRVMETK<RTVSRVDSQRPGPLVPVKKIFVGGIKEDTEEHHVKRLCVWSGKITVIGI- |
Parental | TDRGSGKKRG-FAFVTFDDHD-SVDKIVIQKYHTVNGHNCEVRKALSKQEMAS |
TD.GS.K..G...F.TF..HD.....IVIQKY.TV.G.NCE...ALS.QE.AS | |
Retrocopy | TDWGSDKNSG<LPFITFGNHD<PLNQIVIQKYLTVIGLNCEEKRALSMQERAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 177 .55 RPM |
SRP012922_cerebellum | 0 .00 RPM | 128 .12 RPM |
SRP012922_heart | 0 .00 RPM | 62 .65 RPM |
SRP012922_kidney | 0 .00 RPM | 56 .95 RPM |
SRP012922_liver | 0 .00 RPM | 49 .54 RPM |
SRP012922_lung | 0 .31 RPM | 170 .14 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 55 .21 RPM |
SRP012922_spleen | 0 .00 RPM | 188 .75 RPM |