Parental gene:

MMU.1223, ENSMMUG00000017296

Aliases:None
Description:syntenin-1 [Source:RefSeq peptide;Acc:NP_001244461]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:8:61187481..61218127(+)


>ENSMMUG00000017296
ATGTCGCTCTATCCATCTCTTGAAGACTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTTTTCTGCAAACCCTGC
CAATCCAGCAATTTTGTCAGAAGCTTCTGCTCCTATCTCTCAAGATCGAAATCTCTATCCCAAACTATATCCGGAGCTGT
CTCAATACATGGGGCTGAGTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGG
CAGTTGGTAGCAAGACCTTCCAGTGTGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGA
AATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAAAAATTGGACTCAGGCTTAAATCAATAGATA
ATGGTATATTTGTTCAGCTAGTCCAGGCTAATTCTCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTCCAG
ATCAATGGTGAAAACTGTGCAGGGTGGAGCTCAGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTAC
CATGACCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGGTTTTATCTTTA
AAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAATGGTCTTCTCACAGAACATAACATCTGTGAA
ATCAATGGACAGAATGTCATTGGATTGAAGGACTCTCAAATTGCAGACATACTATCAACATCTGGGACTGTAGTTACTAT
TACAATCATGCCTGCTTTTATCTTTGAACATATTATTAAGCGGATGGCACCAAGCATCATGAAAAGCCTAATGGACCACA
CCATTCCTGAGGTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 68 .62 RPM
SRP007412_brain 109 .47 RPM
SRP007412_cerebellum 75 .49 RPM
SRP007412_heart 53 .06 RPM
SRP007412_kidney 109 .62 RPM
SRP007412_liver 47 .46 RPM
SRP007412_testis 37 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006161 ortholog_one2many 1 retrogene
retro_amel_654,
Bos taurus ENSBTAG00000019910 ortholog_one2many 2 retrogenes
retro_btau_1035, retro_btau_383,
Canis familiaris ENSCAFG00000007112 ortholog_many2many 1 retrogene
retro_cfam_112,
Choloepus hoffmanni ENSCHOG00000003565 ortholog_one2many 5 retrogenes
retro_chof_1063, retro_chof_1151, retro_chof_1910, retro_chof_713, retro_chof_970,
Equus caballus ENSECAG00000015053 ortholog_one2many 1 retrogene
retro_ecab_439,
Homo sapiens ENSG00000137575 ortholog_one2many 2 retrogenes
retro_hsap_3971, retro_hsap_4810,
Gorilla gorilla ENSGGOG00000009019 ortholog_one2many 2 retrogenes
retro_ggor_2666, retro_ggor_2995,
Loxodonta africana ENSLAFG00000010757 ortholog_one2many 1 retrogene
retro_lafr_1044,
Microcebus murinus ENSMICG00000003968 ortholog_one2many 1 retrogene
retro_mmur_170,
Myotis lucifugus ENSMLUG00000004807 ortholog_many2many 1 retrogene
retro_mluc_12,
Mustela putorius furo ENSMPUG00000010339 ortholog_many2many 5 retrogenes
retro_mputfur_1055, retro_mputfur_1340, retro_mputfur_292, retro_mputfur_829, retro_mputfur_933,
Nomascus leucogenys ENSNLEG00000001408 ortholog_one2many 2 retrogenes
retro_nleu_2185, retro_nleu_2525,
Otolemur garnettii ENSOGAG00000013462 ortholog_one2many 1 retrogene
retro_ogar_3259,
Procavia capensis ENSPCAG00000016432 ortholog_one2many 1 retrogene
retro_pcap_186,
Pongo abelii ENSPPYG00000018612 ortholog_one2many 3 retrogenes
retro_pabe_3265, retro_pabe_3266, retro_pabe_3738,
Pan troglodytes ENSPTRG00000020277 ortholog_one2many 2 retrogenes
retro_ptro_2696, retro_ptro_3200,
Tupaia belangeri ENSTBEG00000013965 ortholog_one2many 1 retrogene
retro_tbel_2142,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_2564 84.95 62.08
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Download FASTA sequences of all ENSMMUG00000017296 retrocopies