RetrogeneDB ID: | retro_mmul_2564 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:38641407..38641961(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1223 | ||
Ensembl ID: | ENSMMUG00000017296 | ||
Aliases: | None | ||
Description: | syntenin-1 [Source:RefSeq peptide;Acc:NP_001244461] |
Percent Identity: | 84.95 % |
Parental protein coverage: | 62.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPISQDRNLYPKLYPELSQYMGLSLNEEEIRANV |
MSLYPSLEDLKVDKVI.AQ..FSAN.ANPAILSEASA.IS.D.NLYPKLYPELS.YMGLSLNEEEI..NV | |
Retrocopy | MSLYPSLEDLKVDKVIGAQNTFSANSANPAILSEASASISRDGNLYPKLYPELS*YMGLSLNEEEICVNV |
Parental | AVVSGAPLQGQLVARPSSVNYMVAPVTGNDVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQL |
A.VSGAP.QGQ.VAR.SS.NYMVAPVTGND.GI.RAEIKQ.I.EVILCKDQ.GKIGLRLKSIDN.IFVQL | |
Retrocopy | AMVSGAPIQGQMVARSSSMNYMVAPVTGNDIGIHRAEIKQRICEVILCKDQNGKIGLRLKSIDNSIFVQL |
Parental | VQANSPASLVGLRFGDQVLQINGENCAGWSSDK-AHKVLKQAFGEK |
VQ.N.PASLVGLRFGD.VLQIN.ENCAG.SSDK.AHKV.KQAFGEK | |
Retrocopy | VQTNFPASLVGLRFGD*VLQINSENCAG*SSDK<AHKVFKQAFGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 109 .47 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 68 .62 RPM |
SRP007412_cerebellum | 0 .00 RPM | 75 .49 RPM |
SRP007412_heart | 0 .00 RPM | 53 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 109 .62 RPM |
SRP007412_liver | 0 .00 RPM | 47 .46 RPM |
SRP007412_testis | 0 .00 RPM | 37 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4810 |
Pan troglodytes | retro_ptro_3200 |
Gorilla gorilla | retro_ggor_2995 |
Pongo abelii | retro_pabe_3738 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006161 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019910 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000007112 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003565 | 5 retrocopies | |
Equus caballus | ENSECAG00000015053 | 1 retrocopy | |
Homo sapiens | ENSG00000137575 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009019 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010757 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003968 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004807 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017296 | 1 retrocopy |
retro_mmul_2564 ,
|
Mustela putorius furo | ENSMPUG00000010339 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001408 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013462 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016432 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018612 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020277 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013965 | 1 retrocopy |