RetrogeneDB ID: | retro_btau_1035 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 23:49302305..49303199(-) | ||
Located in intron of: | ENSBTAG00000031432 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000018309 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDCBP | ||
Ensembl ID: | ENSBTAG00000019910 | ||
Aliases: | None | ||
Description: | syntenin-1 [Source:RefSeq peptide;Acc:NP_001068951] |
Percent Identity: | 93. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPVSQDGNLYPKLYPELSQYMGLSLNEEEIRANM |
MSLYPSLEDLKVD.VIQAQTAFSANPANPAILSEASAP.SQDGNLYPKLYPELSQYMGLSLNEEEI..NM | |
Retrocopy | MSLYPSLEDLKVDNVIQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLSLNEEEIHVNM |
Parental | ALVPGAPSQGQVVARPSSM-NHMVAPITGGDIGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQ |
ALVPGAPSQG.V....S....HMVAPITGGDIGI.RAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQ | |
Retrocopy | ALVPGAPSQGVVARPSSMV<GHMVAPITGGDIGIHRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQ |
Parental | LVQANSPSSLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHV |
LVQANSPSSLVGLRFGDQVLQING.NCAGWSSDRAHKVLKQAFGE.ITMTIRDRPFERTITMHKDSTGH. | |
Retrocopy | LVQANSPSSLVGLRFGDQVLQINGKNCAGWSSDRAHKVLKQAFGEIITMTIRDRPFERTITMHKDSTGHI |
Parental | GFVFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNVIGLKDSQIADILSTAGNIVTITIMPAF-IFEHI |
GFVFKNGKITSIVKDSSAARN.LLTEHNI.EV.GQNVIGLKDSQIADILSTAGNIVTITIMPAF.IFEHI | |
Retrocopy | GFVFKNGKITSIVKDSSAARNRLLTEHNISEVKGQNVIGLKDSQIADILSTAGNIVTITIMPAF>IFEHI |
Parental | IKRMAPSIMKSLMDHTIPEV |
IKRMAPSIMKSLMDHTIPEV | |
Retrocopy | IKRMAPSIMKSLMDHTIPEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 60 .34 RPM |
ERP005899_muscle | 0 .42 RPM | 187 .24 RPM |
SRP017611_brain | 0 .96 RPM | 117 .53 RPM |
SRP017611_kidney | 1 .96 RPM | 203 .24 RPM |
SRP017611_liver | 0 .45 RPM | 41 .45 RPM |
SRP030211_testis | 0 .13 RPM | 93 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006161 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019910 | 2 retrocopies |
retro_btau_1035 , retro_btau_383,
|
Canis familiaris | ENSCAFG00000007112 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003565 | 5 retrocopies | |
Equus caballus | ENSECAG00000015053 | 1 retrocopy | |
Homo sapiens | ENSG00000137575 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009019 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010757 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003968 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004807 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017296 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010339 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001408 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013462 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016432 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018612 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020277 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013965 | 1 retrocopy |