Parental gene:

BLOC1S6, ENSMODG00000017628

Aliases:None
Description:biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:203866671..203881244(+)


>ENSMODG00000017628
ATGAGTTTCCCTGGGCAGCAGCAACTGCCGCCGCAGGACCAGGCCCCGCCGGAGCCGCGGTCCCTCGGTCTGGGCTTGGG
GCCGCCCGCAGTGAGTTCTGGCGATGCTTCTCCAGACGAAGGGTTAATGGAAGACTTGACAGTTGAAAATAAAGCTCTGG
AACAACTAGCACAAGGATTACTCTCTCATTATTTACCAGACTTGGAGAGATCAAAACAAGCCCTCCAGGAGCTCACACAG
AACCAAGTGGTACTACTAGATACACTAGAGCAAGAGATTTCAAAATTCAAAGAATGCCATTCTATTTTGGATATTAATGC
TTTGTTTACAGAAGCTAAATTCTATCACAACAAGTTAGTGAATATAAGAAAAGAGATGCTGATGCTTCATGAAAAGACCT
CAAAATTAAAAAAAAGAGCTCTAAAGCTCCAACAGAAGAGACAGAAAGAAGAATTGGAGAGGGAACAACAACGAGAAAAA
GAATTTGAAAGAGAGAAACAATTAACTGCTAAACCAGCGAAAAGGACATAA

Library Parental gene expression (RPM)
SRP007412_brain 9 .77 RPM
SRP007412_cerebellum 5 .88 RPM
SRP007412_heart 10 .77 RPM
SRP007412_kidney 9 .22 RPM
SRP007412_liver 6 .04 RPM
SRP007412_testis 9 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012059 ortholog_one2many 7 retrogenes
retro_chof_1342, retro_chof_20, retro_chof_2054, retro_chof_2102, retro_chof_211, retro_chof_248, retro_chof_600,
Dasypus novemcinctus ENSDNOG00000019785 ortholog_one2one 5 retrogenes
retro_dnov_1687, retro_dnov_1885, retro_dnov_2009, retro_dnov_2411, retro_dnov_275,
Echinops telfairi ENSETEG00000007378 ortholog_one2one 1 retrogene
retro_etel_404,
Gorilla gorilla ENSGGOG00000013892 ortholog_one2one 1 retrogene
retro_ggor_2983,
Macropus eugenii ENSMEUG00000012636 ortholog_one2one 1 retrogene
retro_meug_778,
Microcebus murinus ENSMICG00000005595 ortholog_one2one 1 retrogene
retro_mmur_1610,
Oryctolagus cuniculus ENSOCUG00000017351 ortholog_one2one 1 retrogene
retro_ocun_1575,
Otolemur garnettii ENSOGAG00000013706 ortholog_one2many 1 retrogene
retro_ogar_206,
Ochotona princeps ENSOPRG00000007310 ortholog_one2one 1 retrogene
retro_opri_574,
Pan troglodytes ENSPTRG00000007038 ortholog_one2one 1 retrogene
retro_ptro_2949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_561 91.61 81.25
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2. retro_mdom_1673 89.69 55.11
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Download FASTA sequences of all ENSMODG00000017628 retrocopies