RetrogeneDB ID: | retro_meug_778 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold18629:14999..15280(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLOC1S6 | ||
Ensembl ID: | ENSMEUG00000012636 | ||
Aliases: | None | ||
Description: | biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549] |
Percent Identity: | 64.58 % |
Parental protein coverage: | 65.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QVVLLDTLEQEISKFKECHSILDINALFTEAKYYHNKLVTIRKEMLMLHE-KTSKLKKRALKLQQKRQKE |
QV.LL.T.EQ.ISK.K.CHSILDINALFTEAKYYHNKLV..RK..LMLHE.K.S...K.......K...E | |
Retrocopy | QVALLNTFEQDISKLKGCHSILDINALFTEAKYYHNKLVNTRKDILMLHE<KGSHVLKKST*APTK-ETE |
Parental | ELEREQQREKEFEREKQLTAKPAKRT |
E.E.E...EKE.ERE..LTAKP.KRT | |
Retrocopy | EFE*EPKGEKEIERENKLTAKPVKRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012059 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019785 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000007378 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013892 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012636 | 1 retrocopy |
retro_meug_778 ,
|
Microcebus murinus | ENSMICG00000005595 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017628 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017351 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013706 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007310 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007038 | 1 retrocopy |