Parental gene:

Prelid1, ENSMUSG00000021486

Aliases:Prelid1, 2610524G07Rik, Preli
Description:PRELI domain containing 1 [Source:MGI Symbol;Acc:MGI:1913744]
Organism:Mouse (Mus musculus)
Coordinates:13:55322054..55325271(+)


>ENSMUSG00000021486
ATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGAAGTTCCTGGGACCAAGTGTTCGCCGCCTTCTGGCAACGGTACCC
GAATCCCTATAGCAAACATGTCTTAACCGAAGACATAGTGCACCGGGAGGTGACCCCCGACCAGAAGCTACTGTCCCGGA
GACTCCTGACCAAGACCAACAGGATGCCACGTTGGGCAGAGCGACTGTTTCCTGCCAACGTTGCTCACTCCGTGTACATC
CTGGAGGACTCTATTGTGGACCCCCAGAATCAGACCATGACCACCTTCACCTGGAACATCAACCATGCCCGGCTGATGGT
GGTGGAGGAACGATGTGTTTACTGTGTGAACTCTGACAATAGCGGCTGGACCGAAATCCGTCGGGAAGCCTGGGTCTCCT
CTAGCTTATTTGGCGTCTCCAGAGCTGTCCAGGAATTTGGTCTTGCCCGGTTCAAAAGCAATGTGACCAAGACAATGAAG
GGCTTTGAATACATCCTGGCCAAGCTACAAGGTGAGGCCCCTTCCAAAACCCTTGTTGAGACAGCCAAAGAGGCCAAAGA
GAAAGCAAAGGAGACCGCACTGGCAGCTACAGAGAAGGCCAAGGACCTGGCCAACAAGGCCGCCACCAAGCAGCAGCAGC
GGCAGCTCGTATAA

Library Parental gene expression (RPM)
SRP007412_brain 36 .96 RPM
SRP007412_cerebellum 29 .44 RPM
SRP007412_heart 12 .86 RPM
SRP007412_kidney 53 .88 RPM
SRP007412_liver 55 .19 RPM
SRP007412_testis 7 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002251 ortholog_one2one 1 retrogene
retro_chof_1025,
Callithrix jacchus ENSCJAG00000006953 possible_ortholog 5 retrogenes
retro_cjac_1131, retro_cjac_1689, retro_cjac_2401, retro_cjac_3359, retro_cjac_835,
Cavia porcellus ENSCPOG00000025788 ortholog_one2one 1 retrogene
retro_cpor_231,
Dasypus novemcinctus ENSDNOG00000017550 ortholog_one2one 1 retrogene
retro_dnov_637,
Equus caballus ENSECAG00000023460 ortholog_one2one 1 retrogene
retro_ecab_467,
Gorilla gorilla ENSGGOG00000011762 possible_ortholog 3 retrogenes
retro_ggor_2404, retro_ggor_302, retro_ggor_9,
Macropus eugenii ENSMEUG00000001738 ortholog_one2one 12 retrogenes
retro_meug_1194, retro_meug_1541, retro_meug_1618, retro_meug_1725, retro_meug_1726, retro_meug_2054, retro_meug_274, retro_meug_666, retro_meug_681, retro_meug_854, retro_meug_895, retro_meug_918,
Myotis lucifugus ENSMLUG00000007008 possible_ortholog 2 retrogenes
retro_mluc_239, retro_mluc_64,
Macaca mulatta ENSMMUG00000009046 possible_ortholog 2 retrogenes
retro_mmul_1822, retro_mmul_2457,
Monodelphis domestica ENSMODG00000004804 ortholog_one2many 3 retrogenes
retro_mdom_1529, retro_mdom_221, retro_mdom_596,
Otolemur garnettii ENSOGAG00000011455 possible_ortholog 4 retrogenes
retro_ogar_1352, retro_ogar_2025, retro_ogar_3006, retro_ogar_665,
Rattus norvegicus ENSRNOG00000016410 ortholog_one2one 8 retrogenes
retro_rnor_1138, retro_rnor_1166, retro_rnor_1243, retro_rnor_1906, retro_rnor_2178, retro_rnor_2305, retro_rnor_637, retro_rnor_995,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_449 95.14 66.36
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2. retro_mmus_866 61.78 86.18
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3. retro_mmus_1316 82.72 73.73
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4. retro_mmus_2079 71.01 62.21
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5. retro_mmus_2236 94.29 80.65
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6. retro_mmus_2394 76.97 76.04
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7. retro_mmus_2672 64.04 52.07
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Download FASTA sequences of all ENSMUSG00000021486 retrocopies