RetrogeneDB ID: | retro_mmul_1822 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:25677066..25677424(-) | ||
Located in intron of: | ENSMMUG00000002574 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRELID1 | ||
Ensembl ID: | ENSMMUG00000009046 | ||
Aliases: | PRELID1, PX19 | ||
Description: | PRELI domain-containing protein 1, mitochondrial [Source:RefSeq peptide;Acc:NP_001248148] |
Percent Identity: | 59.84 % |
Parental protein coverage: | 54.79 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MVKY-FLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERL |
M.KY.F.GQ..L.....Q.F.A......N.YSKHVLT......EVTP.QKLLS..LLTKTN.M....E.L | |
Retrocopy | MMKY<FPGQNRLQNF*NQMFTAL*HWCSNSYSKHVLTKNTEYEEVTPAQKLLSQ*LLTKTNGMSC*TEWL |
Parental | FPANVAHSVYILEDSIVDPQNQ-TMTTFTWNINHARLMVVEERCVYCVNSDN |
F.AN.AH.V.ILEDS...PQNQ...TTFT..INHA.LMVVEERC.YCVNS.N | |
Retrocopy | FVANDAHPVSILEDSTRHPQNQ<EVTTFTCSINHAKLMVVEERCIYCVNSEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 6 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .10 RPM |
SRP007412_heart | 0 .00 RPM | 2 .89 RPM |
SRP007412_kidney | 0 .12 RPM | 14 .20 RPM |
SRP007412_liver | 0 .00 RPM | 17 .54 RPM |
SRP007412_testis | 0 .04 RPM | 2 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3565 |
Gorilla gorilla | retro_ggor_2404 |
Callithrix jacchus | retro_cjac_2401 |