Parental gene:

Chmp5, ENSMUSG00000028419

Aliases:Chmp5, 2210412K09Rik, AW545668
Description:charged multivesicular body protein 5 [Source:MGI Symbol;Acc:MGI:1924209]
Organism:Mouse (Mus musculus)
Coordinates:4:40948406..40965303(+)


>ENSMUSG00000028419
ATGAACCGATTCTTCGGAAAAGCGAAACCCAAGGCTCCGCCACCTAGCTTGACGGACTGCATTGGGACGGTGGATAGCAG
GGCAGAATCCATTGACAAAAAGATTTCCCGGCTGGATGCTGAACTAGTGAAATATAAGGATCAAATCAAGAAGATGAGAG
AGGGTCCTGCTAAGAACATGGTCAAACAGAAAGCCCTGAGAGTTTTAAAGCAAAAGCGGATGTATGAGCAACAGCGAGAC
AACCTGGCCCAACAGTCCTTTAACATGGAGCAAGCTAATTACACCATCCAGTCACTAAAGGACACCAAGACCACGGTTGA
TGCCATGAAGTTGGGAGTAAAGGAAATGAAGAAGGCATATAAGGAAGTAAAAATTGACCAGATTGAGGACTTACAAGACC
AGCTGGAGGATATGATGGAAGATGCAAATGAGATCCAGGAAGCCCTGGGCCGCAGCTACGGCACCCCAGAGTTAGATGAG
GACGACCTGGAAGCAGAGTTAGATGCGCTGGGCGATGAGCTTCTGGCTGATGAAGATAGCTCCTACTTGGATGAGGCAGC
TTCCGCTCCTGCAATTCCGGAAGGTGTTCCCACTGACACAAAAAACAAGGATGGCGTGCTGGTGGATGAATTTGGACTGC
CGCAGATTCCCGCTTCGTAG

Library Parental gene expression (RPM)
SRP007412_brain 50 .39 RPM
SRP007412_cerebellum 62 .74 RPM
SRP007412_heart 29 .29 RPM
SRP007412_kidney 75 .59 RPM
SRP007412_liver 46 .18 RPM
SRP007412_testis 39 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012672 ortholog_one2one 1 retrogene
retro_chof_2045,
Callithrix jacchus ENSCJAG00000008104 ortholog_one2one 2 retrogenes
retro_cjac_2868, retro_cjac_4159,
Cavia porcellus ENSCPOG00000003467 ortholog_one2one 2 retrogenes
retro_cpor_1221, retro_cpor_1306,
Dipodomys ordii ENSDORG00000006280 ortholog_one2one 2 retrogenes
retro_dord_292, retro_dord_764,
Echinops telfairi ENSETEG00000001424 ortholog_one2one 1 retrogene
retro_etel_2126,
Homo sapiens ENSG00000086065 ortholog_one2one 2 retrogenes
retro_hsap_4822, retro_hsap_494,
Microcebus murinus ENSMICG00000012113 ortholog_one2one 2 retrogenes
retro_mmur_369, retro_mmur_843,
Myotis lucifugus ENSMLUG00000011045 ortholog_one2one 1 retrogene
retro_mluc_954,
Macaca mulatta ENSMMUG00000020149 ortholog_one2many 1 retrogene
retro_mmul_2573,
Monodelphis domestica ENSMODG00000004012 ortholog_one2one 2 retrogenes
retro_mdom_2002, retro_mdom_595,
Nomascus leucogenys ENSNLEG00000005158 ortholog_one2one 2 retrogenes
retro_nleu_2197, retro_nleu_2420,
Otolemur garnettii ENSOGAG00000000774 ortholog_one2one 6 retrogenes
retro_ogar_2072, retro_ogar_2190, retro_ogar_2386, retro_ogar_2504, retro_ogar_2509, retro_ogar_916,
Pongo abelii ENSPPYG00000019137 ortholog_one2one 2 retrogenes
retro_pabe_239, retro_pabe_3750,
Pan troglodytes ENSPTRG00000020857 ortholog_one2one 2 retrogenes
retro_ptro_3210, retro_ptro_373,
Rattus norvegicus ENSRNOG00000008672 ortholog_one2many 1 retrogene
retro_rnor_2614,
Ictidomys tridecemlineatus ENSSTOG00000026573 ortholog_one2one 1 retrogene
retro_itri_424,
Tupaia belangeri ENSTBEG00000003486 ortholog_one2one 5 retrogenes
retro_tbel_1626, retro_tbel_1894, retro_tbel_2407, retro_tbel_3364, retro_tbel_3494,
Tursiops truncatus ENSTTRG00000010575 ortholog_one2one 1 retrogene
retro_ttru_338,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1469 80.89 70.78
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Download FASTA sequences of all ENSMUSG00000028419 retrocopies