Parental gene:

CHMP5, ENSPPYG00000019137

Aliases:None
Description:Charged multivesicular body protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5RBR3]
Organism:Orangutan (Pongo abelii)
Coordinates:9:28359546..28377219(-)


>ENSPPYG00000019137
ATGAACCGACTCTTCGGGAAAGCGAAACCCAAGGCTCCGCCGCCCAGCCTGACTGACTGCATTGGCACGGTGGACAGCAG
AGCAGAATCCATTGACAAGAAGATTTCTCGATTGGATGCTGAGCTAGTGAAGTATAAGGATCAGATCAAGAAGATGAGAG
AGGGTCCTGCAAAGAATATGGTCAAGCAGAAAGCCTTGCGAGTTTTAAAGCAAAAGAGGATGTATGAGCAGCAGCGGGAC
AATCTTGCCCAACAGTCATTCAACATGGAACAAGCCAATTATACCATCCAGTCATTGAAGGACACCAAGACCACGGTAGA
TGCTATGAAACTGGGAGTAAAGGAAATGAAGAAGGCATACAAGCAAGTGAAGATCGACCAGATTGAGGATTTACAAGACC
AGCTAGAAGATATGATGGAAGATGCAAATGAAATCCAAGAAGCACTGAGTCGCAGTTATGGCACCCCAGAACTGGATGAA
GATGATTTAGAAGCAGAGTTGGATGCACTGGGTGATGAGCTTCTGGCTGATGAAGACAGTTCTTATTTGGATGAGGCAGC
ATCTGCACCTGCAATTCCAGAAGGTGTTCCCACTGATACAAAAAACAAGGATGGAGTTCTGGTGGATGAATTTGGATTGC
CACAGATCCCTGCTTCATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 52 .91 RPM
SRP007412_cerebellum 50 .46 RPM
SRP007412_heart 28 .42 RPM
SRP007412_kidney 47 .47 RPM
SRP007412_liver 28 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012672 ortholog_one2one 1 retrogene
retro_chof_2045,
Callithrix jacchus ENSCJAG00000008104 ortholog_one2one 2 retrogenes
retro_cjac_2868, retro_cjac_4159,
Cavia porcellus ENSCPOG00000003467 ortholog_one2one 2 retrogenes
retro_cpor_1221, retro_cpor_1306,
Dipodomys ordii ENSDORG00000006280 ortholog_one2one 2 retrogenes
retro_dord_292, retro_dord_764,
Echinops telfairi ENSETEG00000001424 ortholog_one2one 1 retrogene
retro_etel_2126,
Homo sapiens ENSG00000086065 ortholog_one2one 2 retrogenes
retro_hsap_4822, retro_hsap_494,
Microcebus murinus ENSMICG00000012113 ortholog_one2one 2 retrogenes
retro_mmur_369, retro_mmur_843,
Myotis lucifugus ENSMLUG00000011045 ortholog_one2one 1 retrogene
retro_mluc_954,
Macaca mulatta ENSMMUG00000020149 ortholog_one2one 1 retrogene
retro_mmul_2573,
Monodelphis domestica ENSMODG00000004012 ortholog_one2one 2 retrogenes
retro_mdom_2002, retro_mdom_595,
Mus musculus ENSMUSG00000028419 ortholog_one2one 1 retrogene
retro_mmus_1469,
Nomascus leucogenys ENSNLEG00000005158 ortholog_one2one 2 retrogenes
retro_nleu_2197, retro_nleu_2420,
Otolemur garnettii ENSOGAG00000000774 ortholog_one2one 6 retrogenes
retro_ogar_2072, retro_ogar_2190, retro_ogar_2386, retro_ogar_2504, retro_ogar_2509, retro_ogar_916,
Pan troglodytes ENSPTRG00000020857 ortholog_one2one 2 retrogenes
retro_ptro_3210, retro_ptro_373,
Rattus norvegicus ENSRNOG00000008672 ortholog_one2many 1 retrogene
retro_rnor_2614,
Ictidomys tridecemlineatus ENSSTOG00000026573 ortholog_one2one 1 retrogene
retro_itri_424,
Tupaia belangeri ENSTBEG00000003486 ortholog_one2one 5 retrogenes
retro_tbel_1626, retro_tbel_1894, retro_tbel_2407, retro_tbel_3364, retro_tbel_3494,
Tursiops truncatus ENSTTRG00000010575 ortholog_one2one 1 retrogene
retro_ttru_338,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_239 83.25 94.98
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2. retro_pabe_3750 90.87 100.00
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Download FASTA sequences of all ENSPPYG00000019137 retrocopies