Parental gene:

Fam60a, ENSMUSG00000039985

Aliases:Fam60a, Ppcs1, Pptcs1, Tera
Description:family with sequence similarity 60, member A [Source:MGI Symbol;Acc:MGI:1929091]
Organism:Mouse (Mus musculus)
Coordinates:6:148921034..148946467(-)


>ENSMUSG00000039985
ATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATATGCAGAGCCAAGTCCTCCAGCTCCCG
GTTCACGGACAGTAAACGTTACGAAAAGGACTTCCAGAGCTGTTTTGGGTTGCATGAGACTCGCTCAGGAGACATCTGTA
ATGCCTGTGTGCTGCTTGTGAAAAGATGGAAGAAGTTGCCGGCAGGATCAAAAAAAAACTGGAATCACGTGGTAGATGCA
AGAGCAGGCCCTAGTCTAAAGACAACATTGAAACCAAAGAAAGTGAAAACTCTATCTGGAAACAGGATGAAAAGCAACCA
GATCAGCAAACTGCAGAAGGAATTTAAACGCCACAACTCTGATGCTCACAGTACCACCTCAAGTGCCTCTCCAGCCCAGT
CTCCATGCTACAGTAACCAGTCAGATGAGGGCTCAGATACAGAGATGGCTTCCAGCTCTAATAGAACTCCGGTTTTTTCC
TTCTTAGATCTTACCTACTGGAAAAGACAGAAAATATGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCAT
CGACACTCATCTCTTCAAGCCTTGCTGCAGCAGTAAGAAAGCAGCTGCCGAGAAGCCCGAGGAGCAGGGGCCGGCACCTC
TGCCCATCTCCACTCAGGAGTGGTGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .12 RPM
SRP007412_cerebellum 0 .30 RPM
SRP007412_heart 0 .28 RPM
SRP007412_kidney 1 .06 RPM
SRP007412_liver 0 .22 RPM
SRP007412_testis 0 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010685 possible_ortholog 4 retrogenes
retro_cfam_1120, retro_cfam_1552, retro_cfam_1692, retro_cfam_1837,
Choloepus hoffmanni ENSCHOG00000007193 ortholog_one2one 17 retrogenes
retro_chof_109, retro_chof_1108, retro_chof_1136, retro_chof_1255, retro_chof_1614, retro_chof_1689, retro_chof_1770, retro_chof_1971, retro_chof_2126, retro_chof_2493, retro_chof_2576, retro_chof_2587, retro_chof_453, retro_chof_511, retro_chof_856, retro_chof_979, retro_chof_998,
Callithrix jacchus ENSCJAG00000001215 possible_ortholog 3 retrogenes
retro_cjac_1072, retro_cjac_3154, retro_cjac_3289,
Felis catus ENSFCAG00000008955 possible_ortholog 4 retrogenes
retro_fcat_1311, retro_fcat_1339, retro_fcat_58, retro_fcat_965,
Oryctolagus cuniculus ENSOCUG00000008618 ortholog_one2one 1 retrogene
retro_ocun_1176,
Rattus norvegicus ENSRNOG00000046048 ortholog_one2many 1 retrogene
retro_rnor_2858,
Rattus norvegicus ENSRNOG00000049943 ortholog_one2many 2 retrogenes
retro_rnor_1121, retro_rnor_2917,
Sarcophilus harrisii ENSSHAG00000006261 ortholog_one2one 1 retrogene
retro_shar_670,
Ictidomys tridecemlineatus ENSSTOG00000007097 ortholog_one2many 1 retrogene
retro_itri_16,
Tursiops truncatus ENSTTRG00000008465 ortholog_one2one 3 retrogenes
retro_ttru_1162, retro_ttru_1498, retro_ttru_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1234 97.74 100.00
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2. retro_mmus_1471 97.75 100.00
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3. retro_mmus_1557 90.60 66.97
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4. retro_mmus_3331 91.28 66.97
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Download FASTA sequences of all ENSMUSG00000039985 retrocopies