Parental gene:

ENSCJAG00000001215

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:36087952..36134073(+)


>ENSCJAG00000001215
ATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATTTGCAGAGCTAAGTCCTCCAGTTCTCG
ATTCACTGACAGTAAACGCTATGAAAAGGACTTCCAGAGCTGTTTTGGATTGCATGAGACTCGTTCAGGAGACATCTGCA
ATGCCTGTGTCCTGCTTGTGAAAAGATGGAAGAAGTTGCCAGCAGGATCAAAAAAAAACTGGAATCATGTGGTAGATGCA
AGGGCTGGACCCAGTCTAAAGACTACATTGAAACCAAAGAAAGTGAAAACTTTATCTGGGAACAGGATAAAAAGCAACCA
GATCAGTAAACTGCAGAAGGAATTTAAACGTCATAATTCTGATGCTCACAGTACCACCTCAAGTGCCTCCCCAGCTCAAT
CTCCTTGTTACAGTAACCAGTCAGATGACGGCTCAGACACAGAGATGGCTTCTGGTTCTAACAGAACACCAGTTTTTTCC
TTTTTAGATCTCACATACTGGAAAAGACAGAAGATTTGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCAT
TGATACACATCTCTTCAAGCCTTGTTGTAGCAATAAGAAAGCAGCTGCTGAGAAGCCAGAGGAGCAAGGGCCAGAGCCTC
TGCCCATCTCCACTCAGGAGTGGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 23 .68 RPM
SRP051959_skeletal_muscle 3 .10 RPM
SRP051959_lymph_node 33 .31 RPM
SRP051959_lung 22 .45 RPM
SRP051959_liver 6 .48 RPM
SRP051959_kidney 26 .31 RPM
SRP051959_heart 12 .86 RPM
SRP051959_colon 17 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001161 ortholog_one2many 1 retrogene
retro_btau_1020,
Canis familiaris ENSCAFG00000010685 ortholog_one2many 4 retrogenes
retro_cfam_1120, retro_cfam_1552, retro_cfam_1692, retro_cfam_1837,
Choloepus hoffmanni ENSCHOG00000007193 ortholog_one2many 17 retrogenes
retro_chof_109, retro_chof_1108, retro_chof_1136, retro_chof_1255, retro_chof_1614, retro_chof_1689, retro_chof_1770, retro_chof_1971, retro_chof_2126, retro_chof_2493, retro_chof_2576, retro_chof_2587, retro_chof_453, retro_chof_511, retro_chof_856, retro_chof_979, retro_chof_998,
Dasypus novemcinctus ENSDNOG00000016873 possible_ortholog 2 retrogenes
retro_dnov_1674, retro_dnov_2668,
Equus caballus ENSECAG00000009655 possible_ortholog 2 retrogenes
retro_ecab_287, retro_ecab_385,
Erinaceus europaeus ENSEEUG00000012617 possible_ortholog 2 retrogenes
retro_eeur_350, retro_eeur_372,
Echinops telfairi ENSETEG00000002888 possible_ortholog 2 retrogenes
retro_etel_1087, retro_etel_427,
Felis catus ENSFCAG00000008955 ortholog_one2many 4 retrogenes
retro_fcat_1311, retro_fcat_1339, retro_fcat_58, retro_fcat_965,
Homo sapiens ENSG00000139146 ortholog_one2many 3 retrogenes
retro_hsap_1928, retro_hsap_1945, retro_hsap_4029,
Gorilla gorilla ENSGGOG00000015484 ortholog_one2many 3 retrogenes
retro_ggor_1405, retro_ggor_1415, retro_ggor_2704,
Microcebus murinus ENSMICG00000003460 possible_ortholog 2 retrogenes
retro_mmur_1176, retro_mmur_409,
Myotis lucifugus ENSMLUG00000009827 ortholog_one2many 3 retrogenes
retro_mluc_1663, retro_mluc_1672, retro_mluc_765,
Macaca mulatta ENSMMUG00000009155 ortholog_one2many 2 retrogenes
retro_mmul_1074, retro_mmul_2324,
Mus musculus ENSMUSG00000039985 possible_ortholog 4 retrogenes
retro_mmus_1234, retro_mmus_1471, retro_mmus_1557, retro_mmus_3331,
Nomascus leucogenys ENSNLEG00000016487 ortholog_one2many 1 retrogene
retro_nleu_1213,
Oryctolagus cuniculus ENSOCUG00000008618 possible_ortholog 1 retrogene
retro_ocun_1176,
Otolemur garnettii ENSOGAG00000008927 ortholog_one2many 4 retrogenes
retro_ogar_1253, retro_ogar_1762, retro_ogar_2117, retro_ogar_251,
Pongo abelii ENSPPYG00000004396 ortholog_one2many 2 retrogenes
retro_pabe_1592, retro_pabe_3309,
Rattus norvegicus ENSRNOG00000046048 possible_ortholog 1 retrogene
retro_rnor_2858,
Rattus norvegicus ENSRNOG00000049943 possible_ortholog 2 retrogenes
retro_rnor_1121, retro_rnor_2917,
Sarcophilus harrisii ENSSHAG00000006261 ortholog_one2many 1 retrogene
retro_shar_670,
Ictidomys tridecemlineatus ENSSTOG00000007097 ortholog_many2many 1 retrogene
retro_itri_16,
Tursiops truncatus ENSTTRG00000008465 ortholog_one2many 3 retrogenes
retro_ttru_1162, retro_ttru_1498, retro_ttru_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1072 79.14 73.30
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2. retro_cjac_3154 88.89 68.33
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3. retro_cjac_3289 97.20 96.38
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Download FASTA sequences of all ENSCJAG00000001215 retrocopies