RetrogeneDB ID: | retro_fcat_1311 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:143400681..143401303(+) | ||
Located in intron of: | ENSFCAG00000009439 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM60A | ||
Ensembl ID: | ENSFCAG00000008955 | ||
Aliases: | None | ||
Description: | family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702] |
Percent Identity: | 55.56 % |
Parental protein coverage: | 90.79 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 6 |
Parental | EEKMFGF-HKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDIC-NACVLLVKRWKK |
E.KMF.F..KPKMY.S.EGC.I.RA...SS.F..SK...KDFQSC.......S.D.C.N..VLL.KR.KK | |
Retrocopy | EDKMFTF<YKPKMY*STEGC*IGRARFCSSQFSYSK*-RKDFQSCSSQLHDTSEDFC>NSRVLLMKR*KK |
Parental | LPAGSKKNW--NHVVDARAGPSLKTTLKPKKVKTLS-GNRIK-SNQISKLQKEFKRHNSDAHSTTSSASP |
LPAG.......NHVV..RAG.SL....KPK.V.....GNRIK..NQ..KLQ.EF..H..D.H.T.....P | |
Retrocopy | LPAGXXXXXXRNHVVGPRAGLSLNSISKPKNVESIL<GNRIK>NNQFRKLQEEFQPHSPDTHHTPQVIWP |
Parental | AQSPCYSNQSDDGSDTEMASGSNRTPVFSFL-DLTYWKRQKICCGI-IYKGRFG-EVLIDTHLFKPCCSN |
.QSPC....SDDGSD.EMASGSN.T..FSFL..LT.WKR.K.CC.....KG..G.EVL..THL.KPCC.N | |
Retrocopy | PQSPCCTYLSDDGSDSEMASGSNSTLPFSFL<NLTCWKRHKLCCEFNSIKGTLG<EVL-TTHLLKPCCGN |
Parental | KKAAAE |
KK...E | |
Retrocopy | KKGFRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 0 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .21 RPM |
SRP017611_liver | 0 .00 RPM | 1 .21 RPM |