Parental gene:

Taf13, ENSMUSG00000048100

Aliases:None
Description:TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:MGI Symbol;Acc:MGI:1913500]
Organism:Mouse (Mus musculus)
Coordinates:3:108571697..108583222(+)


>ENSMUSG00000048100
ATGGCAGATGAGGAGGAAGACCCCACCTTTGAGGAGGAGAATGAAGAAATTGGAGGAGGAGCGGAAGGTGGCCAGGGGAA
GAGAAAGAGACTTTTCTCGAAAGAATTGCGCTGTATGATGTATGGGTTTGGGGACGACCAGAATCCTTACACGGAGTCCG
TGGACATTCTCGAAGACCTTGTCATAGAGTTCATCACTGAAATGACTCACAAGGCAATGTCGATTGGAAGACAAGGTCGA
GTGCAAGTTGAAGATATTGTCTTCCTAATTCGAAAGGATCCAAGGAAGTTTGCTAGAGTTAAAGACTTACTAACTATGAA
TGAAGAATTGAAACGGGCTAGAAAAGCTTTTGACGAAGCCAACTATGGATCTTGA

Library Parental gene expression (RPM)
SRP007412_brain 11 .96 RPM
SRP007412_cerebellum 8 .12 RPM
SRP007412_heart 6 .66 RPM
SRP007412_kidney 9 .34 RPM
SRP007412_liver 7 .97 RPM
SRP007412_testis 15 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004542 ortholog_one2one 1 retrogene
retro_amel_1015,
Canis familiaris ENSCAFG00000019855 ortholog_one2one 1 retrogene
retro_cfam_1084,
Choloepus hoffmanni ENSCHOG00000003347 ortholog_one2one 2 retrogenes
retro_chof_1739, retro_chof_296,
Callithrix jacchus ENSCJAG00000002701 ortholog_one2one 3 retrogenes
retro_cjac_1241, retro_cjac_1268, retro_cjac_969,
Cavia porcellus ENSCPOG00000001081 ortholog_one2one 1 retrogene
retro_cpor_1042,
Dasypus novemcinctus ENSDNOG00000018227 ortholog_one2many 16 retrogenes
retro_dnov_1126, retro_dnov_1140, retro_dnov_1237, retro_dnov_1308, retro_dnov_1539, retro_dnov_1899, retro_dnov_214, retro_dnov_222, retro_dnov_234, retro_dnov_314, retro_dnov_577, retro_dnov_599, retro_dnov_630, retro_dnov_703, retro_dnov_893, retro_dnov_925,
Loxodonta africana ENSLAFG00000011432 ortholog_one2one 2 retrogenes
retro_lafr_781, retro_lafr_799,
Microcebus murinus ENSMICG00000008725 ortholog_one2one 5 retrogenes
retro_mmur_1061, retro_mmur_128, retro_mmur_1376, retro_mmur_53, retro_mmur_576,
Nomascus leucogenys ENSNLEG00000002350 ortholog_one2many 1 retrogene
retro_nleu_27,
Otolemur garnettii ENSOGAG00000013494 ortholog_one2many 6 retrogenes
retro_ogar_192, retro_ogar_2232, retro_ogar_23, retro_ogar_2399, retro_ogar_2659, retro_ogar_2931,
Procavia capensis ENSPCAG00000005773 ortholog_one2many 1 retrogene
retro_pcap_80,
Sorex araneus ENSSARG00000008033 ortholog_one2one 1 retrogene
retro_sara_531,
Sus scrofa ENSSSCG00000006839 ortholog_one2many 1 retrogene
retro_sscr_87,
Ictidomys tridecemlineatus ENSSTOG00000011144 ortholog_one2many 8 retrogenes
retro_itri_1094, retro_itri_1650, retro_itri_1717, retro_itri_1728, retro_itri_214, retro_itri_70, retro_itri_812, retro_itri_969,
Tursiops truncatus ENSTTRG00000003167 ortholog_one2one 1 retrogene
retro_ttru_730,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_710 99.19 100.00
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2. retro_mmus_1272 93.40 85.48
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Download FASTA sequences of all ENSMUSG00000048100 retrocopies