RetrogeneDB ID: | retro_chof_1739 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_372009:395..729(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF13 | ||
Ensembl ID: | ENSCHOG00000003347 | ||
Aliases: | None | ||
Description: | TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa [Source:HGNC Symbol;Acc:11546] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FEEENEEIGGGAEGGQGK-RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGKQ |
FEEENE.IGGGAEGGQGK.RK.LFSKEL.CMMYGFGDDQNPYTESVDILEDLVIEFI.EMTHKAMSIG.Q | |
Retrocopy | FEEENEDIGGGAEGGQGK<RKILFSKELWCMMYGFGDDQNPYTESVDILEDLVIEFIIEMTHKAMSIGRQ |
Parental | GIQVEDIALLIKDPRQFA-VKDLLTM-NEKLKARKAFDEANYGS |
G.....I.L..KDPR.FA.VKDLL.M..E...ARKAFD.A.YGS | |
Retrocopy | GRLLDIIFLIRKDPRKFARVKDLL*M<EELK*ARKAFDGATYGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004542 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019855 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003347 | 2 retrocopies |
retro_chof_1739 , retro_chof_296,
|
Callithrix jacchus | ENSCJAG00000002701 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000001081 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018227 | 16 retrocopies | |
Loxodonta africana | ENSLAFG00000011432 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000008725 | 5 retrocopies | |
Mus musculus | ENSMUSG00000048100 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013494 | 6 retrocopies | |
Procavia capensis | ENSPCAG00000005773 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008033 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006839 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011144 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000003167 | 1 retrocopy |