RetrogeneDB ID:

retro_ogar_192

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873531.1:15971083..15971452(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000016403
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000013494
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_192
ATGGCAGATGAGGAGGAAGACTCTGCTTTTGAGGAAAAAAATGAAGAAATTGGAGGAGGTGCAGCAAGTGGACAGAATAA
AAGTGATTTTTTTCCTAAAGAATTGAAATGTATGATGTATGACTTTGGAGATGACCAGAATCCTTATACTAAGTCAGTAG
ATATTCTTGAAGATATTGTCATAGAGTTCATTACTGAAATGACTCTCAAGGCAATGTCAATCGGAAGACAAGGTCAAGTA
CAAGTTGAAGATGTAGTCTTCTTGATTCGAAAGGACCCCAGGAAGTTTGCTAGGGTTAAAGACTTAACGGTGAACAAAGA
ATTGAAATGGGCTAGAATAGCGCTGGATGAAGCAAACTATGGATCTTGA

ORF - retro_ogar_192 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.45 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADEEEDPAFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTH
MADEEED.AFEE.NEEIGGGA..GQ.K....F.KEL.CMMY.FGDDQNPYT.SVDILED.VIEFITEMT.
RetrocopyMADEEEDSAFEEKNEEIGGGAASGQNKSD-FFPKELKCMMYDFGDDQNPYTKSVDILEDIVIEFITEMTL
ParentalKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYGS
KAMSIGRQG.VQVED.VFLIRKDPRKFARVKDL.T.N.ELK.AR.A.DEANYGS
RetrocopyKAMSIGRQGQVQVEDVVFLIRKDPRKFARVKDL-TVNKELKWARIALDEANYGS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_192 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 52 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000045421 retrocopy
Canis familiaris ENSCAFG000000198551 retrocopy
Choloepus hoffmanni ENSCHOG000000033472 retrocopies
Callithrix jacchus ENSCJAG000000027013 retrocopies
Cavia porcellus ENSCPOG000000010811 retrocopy
Dasypus novemcinctus ENSDNOG0000001822716 retrocopies
Loxodonta africana ENSLAFG000000114322 retrocopies
Microcebus murinus ENSMICG000000087255 retrocopies
Mus musculus ENSMUSG000000481002 retrocopies
Nomascus leucogenys ENSNLEG000000023501 retrocopy
Otolemur garnettii ENSOGAG00000013494 6 retrocopies
Procavia capensis ENSPCAG000000057731 retrocopy
Sorex araneus ENSSARG000000080331 retrocopy
Sus scrofa ENSSSCG000000068391 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000111448 retrocopies
Tursiops truncatus ENSTTRG000000031671 retrocopy



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