Parental gene:

ATP5C1, ENSOCUG00000004642

Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:HGNC Symbol;Acc:833]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:16:12151534..12174424(+)


>ENSOCUG00000004642
ATGTTTTCTCGGGCGAGCGTCGCTGGGCTGTCGGCCAGGGCCTTGCAACCGCAATGGGTCCAAGTTCGAAATATGGCAAC
TTTGAAAGATATTACCAGGCGACTAAAGTCAATCAAAAACATCCAGAAAATTACCAAGTCTATGAAAATGGTGGCAGCAG
CAAAATATGCCCGAGCTGAGAGGGAGCTGAAACCAGCTCGAGTATATGGAATAGGATCTTTAGCTCTGTATGAAAAAGCT
GATATTAAGGCACCTGAAGACAAGAAGAAACACCTCCTTATTGGTGTGTCCTCAGATCGAGGGCTTTGTGGTGCTATTCA
TTCCTCTGTCGCCAAACAGATGAAAAGTGAGGTGGCTGCACTCACAGCAGCTGGAAAAGAAGTTATGCTGGTTGGAGTTG
GTGACAAAATCAGGGGCATACTTCATAGGACTCATTCTGACCAGTTTCTAGTGACATTCAAAGAAGTTGGAAGAAAGCCC
CCTACTTTTGGAGATGCGTCAGTCATTGCTCTTGAATTATTAAACTCTGGATATGAGTTTGATGAAGGGTCTATCATCTT
TAATCGATTTAAGTCTGTAATCTCCTATAAGACAGAAGAAAAGCCAATTTTTTCCCTTAATACCATTGCAAGTGCTGAGA
GCATGAGCATCTATGATGATGTTGATGCTGATGTGCTACAAAATTACCAAGAATACAATCTGGCCAACATCATCTACTAC
TCTCTGAAGGAGTCTACCACCAGTGAGCAGAGTGCGAGAATGACAGCCATGGACAACGCCAGCAAGAATGCTTCTGAGAT
GATTGACAAACTGACTTTGACATTCAACCGTACCCGCCAAGCTGTCATCACGAAAGAGTTGATTGAAATTATCTCTGGTG
CTGCAGCTCTGGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 190 .12 RPM
SRP017611_kidney 432 .89 RPM
SRP017611_liver 84 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005024 ortholog_one2many 1 retrogene
retro_cfam_1781,
Choloepus hoffmanni ENSCHOG00000011229 ortholog_one2one 3 retrogenes
retro_chof_102, retro_chof_297, retro_chof_673,
Callithrix jacchus ENSCJAG00000020635 ortholog_one2many 7 retrogenes
retro_cjac_1079, retro_cjac_1293, retro_cjac_1381, retro_cjac_1636, retro_cjac_2506, retro_cjac_4190, retro_cjac_526,
Cavia porcellus ENSCPOG00000010523 ortholog_one2one 2 retrogenes
retro_cpor_422, retro_cpor_984,
Echinops telfairi ENSETEG00000010549 ortholog_one2one 1 retrogene
retro_etel_1406,
Felis catus ENSFCAG00000000196 ortholog_one2one 1 retrogene
retro_fcat_818,
Homo sapiens ENSG00000165629 ortholog_one2one 1 retrogene
retro_hsap_1415,
Gorilla gorilla ENSGGOG00000009719 ortholog_one2one 1 retrogene
retro_ggor_1094,
Macaca mulatta ENSMMUG00000009207 ortholog_one2one 1 retrogene
retro_mmul_2254,
Monodelphis domestica ENSMODG00000016720 ortholog_one2one 1 retrogene
retro_mdom_1287,
Mus musculus ENSMUSG00000025781 ortholog_one2one 4 retrogenes
retro_mmus_1122, retro_mmus_2008, retro_mmus_3451, retro_mmus_3644,
Nomascus leucogenys ENSNLEG00000011917 ortholog_one2one 1 retrogene
retro_nleu_1836,
Otolemur garnettii ENSOGAG00000015242 ortholog_one2many 2 retrogenes
retro_ogar_1099, retro_ogar_2738,
Procavia capensis ENSPCAG00000004971 ortholog_one2one 1 retrogene
retro_pcap_99,
Pongo abelii ENSPPYG00000002076 ortholog_one2one 1 retrogene
retro_pabe_1170,
Pan troglodytes ENSPTRG00000002277 ortholog_one2one 1 retrogene
retro_ptro_968,
Pteropus vampyrus ENSPVAG00000006512 ortholog_one2one 3 retrogenes
retro_pvam_1466, retro_pvam_51, retro_pvam_530,
Ictidomys tridecemlineatus ENSSTOG00000026133 ortholog_one2one 1 retrogene
retro_itri_665,
Tupaia belangeri ENSTBEG00000011530 ortholog_one2one 4 retrogenes
retro_tbel_1763, retro_tbel_2023, retro_tbel_4384, retro_tbel_4406,
Tarsius syrichta ENSTSYG00000003035 ortholog_one2one 4 retrogenes
retro_tsyr_1268, retro_tsyr_1988, retro_tsyr_465, retro_tsyr_506,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_363 81.85 99.66
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2. retro_ocun_1171 76.22 54.03
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Download FASTA sequences of all ENSOCUG00000004642 retrocopies