RetrogeneDB ID: | retro_cpor_422 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_15:19070079..19070630(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5C1 | ||
Ensembl ID: | ENSCPOG00000010523 | ||
Aliases: | None | ||
Description: | ATP synthase gamma chain [Source:UniProtKB/TrEMBL;Acc:H0VH31] |
Percent Identity: | 74.87 % |
Parental protein coverage: | 66.19 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | IQVRNMATLKDITRRLKSI-KNIQKITKSMKMVAAAKYARAERELKPARIYGIGSLALYEKADIKV-PED |
IQV.NMA.LKD.TR.LKSI...IQKITKSMKMVAA.KYA..ERELKPA.IYGIGS.ALYEK.DIK...ED | |
Retrocopy | IQV*NMAALKDTTR*LKSI<LKIQKITKSMKMVAATKYA*IERELKPAHIYGIGSFALYEKFDIKI<TED |
Parental | KKKHLLIGVSSDRGLCGAIHASVAKQIKNEVATLTAAGKEVMIVGIGDKIRGILSRTHSDQFLVTFKDVG |
.KKHLLIGVSSDRGLCGAI..SVA.Q.K....TL.A.G.EV...G.GDK.R.IL.R.HSDQFLVTFKDVG | |
Retrocopy | QKKHLLIGVSSDRGLCGAIPSSVAEQMKSQMVTLIAVGEEVTLIGTGDKFRSILFRIHSDQFLVTFKDVG |
Parental | RKPPTFGDASVIALELLNSGYEFDDGSIIFNRFRSV-ISYKTEEKPI |
RKPPTFGD.S.IALELL.SGYEF...SII.NRFRSV.IS..TEEK.I | |
Retrocopy | RKPPTFGDTSIIALELLTSGYEFEEDSIILNRFRSV>ISHETEEKLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 70 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 192 .10 RPM |
SRP017611_liver | 0 .00 RPM | 168 .32 RPM |
SRP040447_lung | 0 .00 RPM | 56 .75 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 232 .13 RPM |