Parental gene: | KPNA2, ENSOCUG00000015913 |
| Aliases: | None |
| Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 19:49592432..49602809(-) |
>ENSOCUG00000015913
ATGTCCACCAATGAGAATGCCAACTCACCGGCCGCCCGGCTCCACAGATTCAAGAACAAGGGGAAGGACAGCACCGAAAT
GAGACGGCGCCGAATAGAAGTGAACGTGGAGCTGAGGAAGGCCAAGAAGGATGACCAGATGCTGAAGAGGAGGAACGTGA
GCTCCTTTCCCGACGATGCGACTTCGCCGCTGCAGGAAAACCGCAACAACCAGGGCACTGTACATTGGTCTGTTGATGAC
ATTGTCAAAGGCATAACCAGCAACAATTTGGAAAGCCAGCTCCAAGCTACCCAAGCTGCTAGGAAACTGCTTTCCAGGGA
AAAACAGCCCCCTATAGACAACATAATCCGGGCTGGTTTGATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTGTA
GCCCCATTCAGTTTGAATCTGCCTGGGCGCTCACTAACATTGCTTCTGGGACCTCAGAACAAACTAAGGCGGTGGTGGAT
GGAGGTGCCATCCCAGCATTCATTTCCCTGTTGGCATCTCCCCATGCTCACATCAGCGAACAAGCTGTATGGGCTCTAGG
GAACATTGCAGGTGATGGTTCAGTTTTCCGAGATTTGGTTATCAAGTATGGTGCAATTGACCCACTGTTGGCTCTTCTGG
CTGTTCCTGATATGTCCTCTTTGGCATGCGGTTACTTACGTAATCTGACATGGACACTTTCAAACCTTTGTCGCAACAAG
AATCCTGCACCCCCATTAGATGCCGTTGAGCAGATTCTTCCTACTTTAGTTCGTCTCCTGCATCACGATGATCCGGAAGT
GTTAGCAGATACCTGCTGGGCGATTTCCTATCTCACTGATGGTCCAAATGAGCGGATTGAAATGGTTGTGAAGACAGGAG
TTGTGCCGCAACTCGTGAAGCTTCTAGGAGCTAATGATTTGCCAATTGTGACTCCTGCGCTAAGAGCCATAGGGAATATT
GTCACAGGGACAGATGAACAGACACAGGTTGTGATAGATGCGGGAGCACTTGCTGTCTTTCCCAGCCTGCTGACTAACCC
CAAAACTAACATCCAGAAGGAGGCCACGTGGACAATGTCAAACATCACAGCTGGGCGTCAGGACCAGATACAGCAAGTTG
TGAATCACGGATTGGTCCCGTTCCTTGTTGGTGTTCTCTCTAAGGCAGACTTTAAGACACAAAAAGAAGCAGTATGGGCT
GTAACCAACTATACAAGTGGCGGAACAGTTGAACAGATTGTGTACCTTGTTCACTGTGGTATAATAGAACCGTTGATGAA
CCTCTTGACCGCAAAGGATACCAAAATTATTCTGGTTATTCTGGATGCCATTTCAAATATCTTCCAGGCTGCTGAGAAAT
TAGGTGAAACTGAGAAACTTAGTATAATGATTGAAGAATGTGGAGGCTTGGATAAAATAGAAGCTCTTCAAAACCATGAG
AATGAATCCGTGTATAGGGCTTCATTAAACTTGATTGAGAAGTACTTCTCTATAGAGGAAGAGGAAGATCAGAATGTTGC
GCCAGAGACCACCTCTGAAGGCTACACCTTCCAAGTGCAGGATGGGGCGCCGGGCGCCTTTCACTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 9 .22 RPM |
| SRP017611_kidney | 11 .05 RPM |
| SRP017611_liver | 6 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000018411 | ortholog_one2many | 3 retrogenes | |
| Bos taurus | ENSBTAG00000012225 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000011598 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000026318 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000019151 | possible_ortholog | 6 retrogenes | |
| Equus caballus | ENSECAG00000020573 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000004445 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000001936 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000027946 | possible_ortholog | 7 retrogenes | |
| Macaca mulatta | ENSMMUG00000018256 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000003897 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000018362 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000027672 | possible_ortholog | 7 retrogenes | |
| Pongo abelii | ENSPPYG00000008569 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000015329 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000011391 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_426 | 85.71 | 58.98 | Please wait, loading  |
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| 2. | retro_ocun_690 | 95.84 | 100.00 | Please wait, loading |
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| 3. | retro_ocun_1765 | 99.25 | 100.00 | Please wait, loading |
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| 4. | retro_ocun_1916 | 99.43 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSOCUG00000015913 retrocopies