Parental gene:

KPNA2, ENSFCAG00000001936

Aliases:None
Description:karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395]
Organism:Cat (Felis catus)
Coordinates:E1:48646601..48655262(-)


>ENSFCAG00000001936
ATGTCCACCAACGAGAATGCTAATTCACCAGCTGCCCGCCTTAACAGATTCAAGAACAAGGGGAAAGACAGTACAGAAAT
GAGGCGCCGCCGAATAGAAGTTAACGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGCTGAAAAGGAGAAACGTAA
GCTCGTTTCCTGATGACGCAACGTCCCCACTGCAGGAAAACCGCAACAACCAGGGCACTGTCAATTGGTCTGTTGATGAC
ATTGTCAAAGGCATAAACAGCAACAATTTGGAAAGCCAGCTCCAGGCTACTCAAGCTGCTAGGAAACTGCTTTCTAGGGA
AAAACAGCCTCCCATAGACAACATAATCCGAGCTGGTTTGATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTGTA
GCCCCATTCAGTTCGAATCTGCTTGGGCCCTCACTAACATTGCTTCCGGTACATCAGAACAGACCAAGGCTGTGGTAGAT
GGAGGTGCTATCCCAGCATTCATTTCTCTGTTGGCCTCTTCCCATGCCCACATCAGTGAGCAAGCTGTATGGGCTCTAGG
AAACATTGCAGGTGATGGTTCAGTTTTCCGAGACTTGGTTATCAAGTACGGTGCAGTTGACCCGCTGTTGGCTCTCCTTG
CTGTTCCTGATATGTCATCTTTAGCATGTGGTTACTTACGGAACCTTACTTGGACACTCTCAAACCTTTGTCGCAACAAG
AATCCTGCACCCCCATTAGATGCTGTTGAGCAGATTCTTCCTACCTTAGTTCGTCTTCTGCATCATGATGATCCAGAAGT
ATTAGCGGATACCTGCTGGGCCATTTCCTACCTTACTGATGGTCCAAATGAACGGATTGAAATGGTCGTGAAAACAGGAG
TTGTGCCCCAACTTGTGAAGCTTCTAGGAGCTACTGAATTGCCCATTGTGACTCCTGCGCTAAGAGCCATAGGAAATATT
GTCACTGGGACAGATGAACAGACTCAGGTTGTAATAGATGCGGGAGCACTTGCTGTCTTTCCCAGCCTACTAACGAACCC
CAAAACTAATATTCAGAAGGAAGCTACGTGGACAATGTCAAACATCACAGCTGGTCGNNNNNNNNNNNNNNNNNNNNGTC
TTAACTTAATCTCTGAAGTAAACTTGTTTCCTTATGTTTATGCAGACTTTAAGACACAAAAGGAAGCTGTGTGGGCTGTG
ACCAACTATACGAGTGGCGGAACAGTTGAGCAGATTGTATACCTCGTTCACTGTGGCATAATAGAACCATTGATGAACCT
CTTAACTGCAAAAGATACCAAAATCATTCTGGTTATTCTGGATGCCATTTCAAACATCTTTCAGGCTGCTGAGAAACTAG
GTGAAACTGAGAAACTCAGTATAATGATTGAAGAATGCGGAGGTTTGGACAAAATTGAAGCTCTACAAAACCATGAAAAT
GAGTCTGTGTACAAAGCTTCATTAAACTTGATTGAGAAGTATTTCTCTGTAGAGGAAGAAGAAGATCAAAATGTTGTGCC
AGAAACTACCTCTGAAAGCTACACATTCCAAGTTCAGGATGGCACTCCCGGGACCTTTAACTTC

Library Parental gene expression (RPM)
SRP017611_liver 8 .59 RPM
SRP017611_kidney 11 .03 RPM
SRP017611_brain 15 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018411 ortholog_one2many 3 retrogenes
retro_amel_1161, retro_amel_1318, retro_amel_440,
Bos taurus ENSBTAG00000012225 ortholog_one2one 1 retrogene
retro_btau_1830,
Canis familiaris ENSCAFG00000011598 ortholog_one2many 2 retrogenes
retro_cfam_648, retro_cfam_90,
Cavia porcellus ENSCPOG00000026318 ortholog_one2many 1 retrogene
retro_cpor_46,
Dasypus novemcinctus ENSDNOG00000019151 ortholog_one2many 6 retrogenes
retro_dnov_1184, retro_dnov_1811, retro_dnov_2161, retro_dnov_2279, retro_dnov_379, retro_dnov_693,
Equus caballus ENSECAG00000020573 ortholog_one2one 2 retrogenes
retro_ecab_1017, retro_ecab_1123,
Echinops telfairi ENSETEG00000004445 ortholog_one2one 2 retrogenes
retro_etel_346, retro_etel_347,
Homo sapiens ENSG00000182481 ortholog_one2one 1 retrogene
retro_hsap_2950,
Gorilla gorilla ENSGGOG00000027535 ortholog_one2one 2 retrogenes
retro_ggor_2044, retro_ggor_2609,
Myotis lucifugus ENSMLUG00000027946 ortholog_one2many 7 retrogenes
retro_mluc_1034, retro_mluc_1258, retro_mluc_1414, retro_mluc_288, retro_mluc_50, retro_mluc_52, retro_mluc_993,
Macaca mulatta ENSMMUG00000018256 ortholog_one2many 3 retrogenes
retro_mmul_1140, retro_mmul_1635, retro_mmul_1947,
Monodelphis domestica ENSMODG00000003897 ortholog_one2many 1 retrogene
retro_mdom_271,
Mus musculus ENSMUSG00000018362 ortholog_one2many 1 retrogene
retro_mmus_229,
Nomascus leucogenys ENSNLEG00000001749 ortholog_one2one 3 retrogenes
retro_nleu_1052, retro_nleu_1634, retro_nleu_208,
Oryctolagus cuniculus ENSOCUG00000015913 ortholog_one2one 4 retrogenes
retro_ocun_1765, retro_ocun_1916, retro_ocun_426, retro_ocun_690,
Otolemur garnettii ENSOGAG00000027672 ortholog_one2many 7 retrogenes
retro_ogar_1044, retro_ogar_1142, retro_ogar_1757, retro_ogar_2008, retro_ogar_464, retro_ogar_477, retro_ogar_936,
Pongo abelii ENSPPYG00000008569 ortholog_one2many 1 retrogene
retro_pabe_3501,
Pteropus vampyrus ENSPVAG00000004976 ortholog_one2one 2 retrogenes
retro_pvam_1321, retro_pvam_1333,
Rattus norvegicus ENSRNOG00000015329 ortholog_one2many 1 retrogene
retro_rnor_42,
Sarcophilus harrisii ENSSHAG00000011391 ortholog_one2one 1 retrogene
retro_shar_165,
Tupaia belangeri ENSTBEG00000006274 ortholog_one2one 14 retrogenes
retro_tbel_1635, retro_tbel_2077, retro_tbel_2672, retro_tbel_2792, retro_tbel_290, retro_tbel_3638, retro_tbel_4120, retro_tbel_4358, retro_tbel_4414, retro_tbel_4435, retro_tbel_4558, retro_tbel_810, retro_tbel_97, retro_tbel_976,
Vicugna pacos ENSVPAG00000001855 ortholog_one2one 3 retrogenes
retro_vpac_124, retro_vpac_162, retro_vpac_163,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_921 77.66 69.13
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2. retro_fcat_1176 71.67 56.25
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Download FASTA sequences of all ENSFCAG00000001936 retrocopies